SMTL ID : 5fe8.1 (1 other biounit)

Crystal structure of human PCAF bromodomain in complex with compound SL1126 (compound 12)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 5WT: ~{N}-(1,4-dimethyl-2-oxidanylidene-quinolin-7-yl)ethanamide(Non-covalent)

5WT.1: 8 residues within 4Å: Chain A: W.34, P.35, V.40, E.44, A.45, Y.90, N.91, Y.97 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:E.44, A:A.45, A:Y.90, A:Y.97 Hydrogen bonds: A:P.35, A:N.91 Water bridges: A:K.41 pi-Stacking: A:Y.97, A:Y.97

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: P.39, V.40, Y.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.40 EDO.3: 1 residues within 4Å: Chain A: I.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.118 Water bridges: A:D.12, A:K.73 EDO.4: 1 residues within 4Å: Chain A: P.92 No protein-ligand interaction detected (PLIP) EDO.5: 7 residues within 4Å: Chain A: T.19, S.22, I.23, Q.26, K.111, E.114, A.115 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Structure-Based Identification of Inhibitory Fragments Targeting the p300/CBP-Associated Factor Bromodomain. J.Med.Chem. (2016)

Release Date

2016-01-13

Peptides

Histone acetyltransferase KAT2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase KAT2B

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