SMTL ID : 5lvq.2 (1 other biounit)

Crystal structure of human PCAF bromodomain in complex with compound-D (CPD-D), N-methyl-2-(tetrahydro-2H-pyran-4-yloxy)benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.25, K.28, S.62, K.66 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.25, A:K.28, A:K.28 EDO.2: 4 residues within 4Å: Chain A: P.35, E.44, Y.97 Ligands: DMS.3 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.34, A:P.35

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: P.35, V.40, Y.48, N.91 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.91 pi-Cation interactions: A:Y.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Navratilova, I. et al., Discovery of New Bromodomain Scaffolds by Biosensor Fragment Screening. ACS Med Chem Lett (2016)

Release Date

2016-10-26

Peptides

Histone acetyltransferase KAT2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Histone acetyltransferase KAT2B

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