- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-2-2-1-1-mer
- Ligands
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: D.69, E.71
- Ligands: GTP.1
No protein-ligand interaction detected (PLIP)MG.5: 3 residues within 4Å:- Chain B: Q.11, E.69
- Ligands: GDP.4
No protein-ligand interaction detected (PLIP)MG.8: 2 residues within 4Å:- Chain B: D.295, S.296
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:S.296, H2O.2
MG.10: 3 residues within 4Å:- Chain C: D.69, E.71
- Ligands: GTP.9
No protein-ligand interaction detected (PLIP)MG.13: 5 residues within 4Å:- Chain D: S.176, T.178, E.181
- Ligands: GDP.12, MG.14
No protein-ligand interaction detected (PLIP)MG.14: 4 residues within 4Å:- Chain D: Q.11, N.99
- Ligands: GDP.12, MG.13
No protein-ligand interaction detected (PLIP)- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: D.39, T.41, G.44, D.47, E.55
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.39, A:T.41, A:T.41, A:G.44, A:E.55
CA.6: 1 residues within 4Å:- Chain B: E.111
No protein-ligand interaction detected (PLIP)CA.11: 6 residues within 4Å:- Chain C: D.39, T.41, G.44, G.45, D.47, E.55
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.39, C:D.39, C:T.41, C:E.55
CA.16: 3 residues within 4Å:- Chain A: S.158, E.196
- Chain E: D.42
No protein-ligand interaction detected (PLIP)- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.4: 18 residues within 4Å:- Chain B: G.10, Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, V.175, S.176, E.181, N.204, Y.222, N.226
- Ligands: MG.5, 6YK.7
19 PLIP interactions:19 interactions with chain B- Hydrogen bonds: B:Q.11, B:Q.11, B:C.12, B:S.138, B:G.142, B:T.143, B:T.143, B:G.144, B:E.181, B:N.204, B:N.204, B:N.226, B:N.226
- Water bridges: B:A.97, B:A.97, B:S.138, B:L.139
- pi-Stacking: B:Y.222, B:Y.222
GDP.12: 21 residues within 4Å:- Chain D: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, G.141, G.142, T.143, G.144, V.175, S.176, E.181, N.204, Y.222, L.225, N.226
- Ligands: MG.13, MG.14, 6YK.15
14 PLIP interactions:14 interactions with chain D- Hydrogen bonds: D:Q.11, D:C.12, D:S.138, D:G.142, D:T.143, D:T.143, D:G.144, D:E.181, D:N.204, D:N.204, D:N.226, D:N.226
- pi-Stacking: D:Y.222, D:Y.222
- 2 x 6YK: (2~{S},4~{R})-4-[[2-[(1~{R},3~{R})-1-acetyloxy-3-[[(2~{S},3~{S})-2-[[(2~{R})-1,2-dimethylpyrrolidin-2-yl]carbonylamino]-3-methyl-pentanoyl]-methyl-amino]-4-methyl-pentyl]-1,3-thiazol-4-yl]carbonylamino]-5-(4-aminophenyl)-2-methyl-pentanoic acid(Non-covalent)
6YK.7: 22 residues within 4Å:- Chain B: Q.11, Q.15, P.173, K.174, V.175, D.177, T.219, P.220, T.221, Y.222, G.223, L.225, R.276
- Chain C: L.248, P.325, V.328, N.329, I.332, F.351, V.353, I.355
- Ligands: GDP.4
21 PLIP interactions:13 interactions with chain B, 8 interactions with chain C- Hydrophobic interactions: B:Q.15, B:T.219, B:T.221, B:Y.222, B:Y.222, B:L.225, C:L.248, C:P.325, C:V.328, C:I.332, C:V.353, C:I.355
- Hydrogen bonds: B:Q.11, B:T.221, B:Y.222, B:G.223, C:N.329, C:N.329
- Water bridges: B:Q.15
- Salt bridges: B:D.177, B:R.276
6YK.15: 14 residues within 4Å:- Chain D: Q.11, Q.15, K.174, V.175, S.176, D.177, T.219, P.220, T.221, Y.222, G.223, L.225, R.276
- Ligands: GDP.12
13 PLIP interactions:13 interactions with chain D- Hydrophobic interactions: D:Q.15, D:T.219, D:T.221, D:Y.222, D:Y.222, D:Y.222, D:L.225
- Hydrogen bonds: D:Q.11, D:Q.15, D:T.221, D:Y.222, D:G.223
- Salt bridges: D:R.276
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.17: 17 residues within 4Å:- Chain F: K.74, I.148, K.150, Q.183, K.184, Y.185, L.186, K.198, D.200, H.239, L.240, T.241, N.242, D.318, M.320, I.330, E.331
10 PLIP interactions:10 interactions with chain F- Hydrogen bonds: F:K.150, F:Q.183, F:L.186, F:K.198, F:T.241, F:T.241, F:N.242
- Salt bridges: F:K.74, F:K.74, F:K.150
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leverett, C.A. et al., Design, Synthesis, and Cytotoxic Evaluation of Novel Tubulysin Analogues as ADC Payloads. ACS Med Chem Lett (2016)
- Release Date
- 2016-12-28
- Peptides
- Tubulin alpha chain: AC
Tubulin beta chain: BD
Stathmin-4: E
TTL protein: F - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
EF
F
SMTL ID : 5kx5.1
Crystal structure of tubulin-stathmin-TTL-Compound 11 complex
Tubulin alpha chain
Tubulin beta chain
Stathmin-4
TTL protein
Related Entries With Identical Sequence
3du7.1 | 3e22.1 | 3hkb.1 | 3hkc.1 | 3hkd.1 | 3hke.1 | 3n2g.1 | 3n2k.1 | 4i4t.1 | 4i50.1 | 4i55.1 | 4ihj.1 | 4iij.1 | 4o2a.1 | 4o2b.1 | 4o4h.1 | 4o4i.1 | 4o4j.1 | 4o4l.1 | 4tuy.1 | 4tv8.1 | 4tv9.1 | 4x1i.1 | 4x1k.1 | 4x1y.1 | 4x20.1 | 4yj2.1 | 4yj3.1 | 4zhq.1 | 4zi7.1 more...less...4zol.1 | 5bmv.1 | 5c8y.1 | 5ca0.1 | 5ca1.1 | 5cb4.1 | 5ezy.1 | 5fnv.1 | 5h74.1 | 5h7o.1 | 5iyz.1 | 5j2t.1 | 5j2u.1 | 5jh7.1 | 5jqg.1 | 5jvd.1 | 5la6.1 | 5lov.1 | 5lp6.1 | 5lxs.1 | 5lxt.1 | 5lyj.1 | 5m7e.1 | 5m7g.1 | 5m8d.1 | 5m8g.1 | 5mf4.1 | 5nfz.1 | 5ng1.1 | 5njh.1 | 5o7a.1 | 5osk.1 | 5ov7.1 | 5s4l.1 | 5s4m.1 | 5s4n.1 | 5s4o.1 | 5s4p.1 | 5s4q.1 | 5s4r.1 | 5s4s.1 | 5s4t.1 | 5s4u.1 | 5s4v.1 | 5s4w.1 | 5s4x.1 | 5s4y.1 | 5s4z.1 | 5s50.1 | 5s51.1 | 5s52.1 | 5s53.1 | 5s54.1 | 5s55.1 | 5s56.1 | 5s57.1 | 5s58.1 | 5s59.1 | 5s5a.1 | 5s5b.1 | 5s5c.1 | 5s5d.1 | 5s5e.1 | 5s5f.1 | 5s5g.1 | 5s5h.1 | 5s5i.1 | 5s5j.1 | 5s5k.1 | 5s5l.1 | 5s5m.1 | 5s5n.1 | 5s5o.1 | 5s5p.1 | 5s5q.1 | 5s5r.1 | 5s5s.1 | 5s5t.1 | 5s5u.1 | 5s5v.1 | 5s5w.1 | 5s5x.1 | 5s5y.1 | 5s5z.1 | 5s60.1 | 5s61.1 | 5s62.1 | 5s63.1 | 5s64.1 | 5s65.1 | 5s66.1 | 5s67.1 | 5sb3.1 | 5sb4.1 | 5sb5.1 | 5sb6.1 | 5sb7.1 | 5sb8.1 | 5sb9.1 | 5sba.1 | 5sbb.1 | 5sbc.1 | 5sbd.1 | 5sbe.1 | 5xhc.1 | 5xi5.1 | 5xi7.1 | 5xiw.1 | 5xke.1 | 5xkf.1 | 5xkg.1 | 5xkh.1 | 5xlt.1 | 5xlz.1 | 5xp3.1 | 5yl2.1 | 5yl4.1 | 5ylj.1 | 5yls.1 | 5yz3.1 | 5z4u.1 | 5zxh.1 | 6agk.1 | 6br1.1 | 6brf.1 | 6bry.1 | 6bs2.1 | 6d88.1 | 6eg5.1 | 6f7c.1 | 6fii.1 | 6fjf.1 | 6fjm.1 | 6fkj.1 | 6fkl.1 | 6gf3.1 | 6gj4.1 | 6hx8.1 | 6jcj.1 | 6k9v.1 | 6knz.1 | 6kpp.1 | 6lsm.1 | 6lsn.1 | 6n47.1 | 6nng.1 | 6o5m.1 | 6o5n.1 | 6o61.1 | 6pc4.1 | 6qqn.1 | 6qtn.1 | 6ses.1 | 6tis.1 | 6tiu.1 | 6tiy.1 | 6tiz.1 | 6wsl.1 | 6x1c.1 | 6x1e.1 | 6x1f.1 | 6xer.1 | 6xes.1 | 6xet.1 | 6y4m.1 | 6y4n.1 | 6y6d.1 | 7au5.1 | 7cda.1 | 7ce6.1 | 7ce8.1 | 7cek.1 | 7cld.1 | 7cnm.1 | 7cnn.1 | 7cno.1 | 7dad.1 | 7dae.1 | 7daf.1 | 7db9.1 | 7dba.1 | 7dbb.1 | 7dbc.1 | 7dbd.1 | 7dp8.1 | 7e4z.1 | 7emj.1 | 7en3.1 | 7exc.1 | 7l05.1 | 7lz7.1 | 7lz8.1 | 7ogn.1 | 7ttd.1 | 7tte.1 | 7ttf.1 | 7un1.3 | 7un1.5 | 7un1.9 | 7un1.11 | 7un1.13 | 7un1.16 | 7un1.18 | 7un1.20 | 7un1.23 | 7un1.25 | 7un1.27 | 7un1.30 | 7un1.32 | 7un1.34 | 7un1.36 | 7un1.38 | 7un1.40 | 7un1.43 | 7un1.45 | 7un1.47 | 7un1.50 | 7un1.52 | 7un1.54 | 7un1.57 | 7un1.59 | 7un1.61 | 7un1.64 | 7un1.66 | 7un1.68 | 7un1.70 | 7un1.72 | 7un1.74 | 7un1.77 | 7un1.79 | 7un1.81 | 7un1.84 | 7un1.86 | 7un1.88 | 7ung.17 | 7ung.19 | 7ung.21 | 7ung.23 | 7ung.25 | 7ung.27 | 7ung.29 | 7ung.41 | 7ung.43 | 7ung.45 | 7ung.47 | 7ung.49 | 7ung.51 | 7ung.53 | 7ung.60 | 7ung.62 | 7ung.64 | 7ung.66 | 7ung.68 | 7ung.70 | 7ung.72 | 7ung.82 | 7ung.84 | 7ung.86 | 7ung.88 | 7ung.90 | 7ung.92 | 7ung.94 | 7ung.97 | 7ung.99 | 7ung.101 | 7ung.103 | 7ung.105 | 7ung.107 | 7ung.120 | 7ung.122 | 7ung.124 | 7ung.126 | 7ung.128 | 7ung.130 | 7ung.143 | 7ung.145 | 7ung.147 | 7ung.149 | 7ung.151 | 7ung.153 | 7ung.160 | 7ung.162 | 7ung.164 | 7ung.166 | 7ung.168 | 7ung.170 | 7ung.172 | 7ung.176 | 7ung.178 | 7ung.180 | 7ung.182 | 7ung.184 | 7ung.186 | 7ung.188 | 7ung.196 | 7ung.198 | 7ung.200 | 7ung.202 | 7ung.204 | 7ung.206 | 7ung.211 | 7ung.213 | 7ung.215 | 7ung.217 | 7ung.219 | 7ung.221 | 7ung.223 | 7ung.228 | 7ung.230 | 7ung.232 | 7ung.234 | 7ung.236 | 7ung.238 | 7ung.246 | 7ung.248 | 7ung.250 | 7ung.252 | 7ung.254 | 7ung.256 | 7ung.260 | 7ung.262 | 7ung.264 | 7ung.266 | 7ung.268 | 7ung.270 | 7ung.274 | 7ung.276 | 7ung.278 | 7ung.280 | 7ung.282 | 7ung.284 | 7ung.286 | 7ung.288 | 7ung.290 | 7ung.292 | 7ung.294 | 7ung.296 | 7ung.298 | 7ung.300 | 7ung.302 | 7ung.304 | 7ung.306 | 7ung.308 | 7ung.310 | 7ung.312 | 7ung.314 | 7ung.316 | 7ung.318 | 7ung.320 | 7ung.322 | 7ung.324 | 7ung.326 | 7ung.328 | 7ung.331 | 7ung.333 | 7ung.335 | 7ung.337 | 7ung.339 | 7ung.341 | 7ung.344 | 7ung.346 | 7ung.348 | 7ung.350 | 7ung.352 | 7ung.354 | 7ung.358 | 7ung.360 | 7ung.362 | 7ung.364 | 7ung.366 | 7ung.368 | 7ung.372 | 7ung.374 | 7ung.376 | 7ung.378 | 7ung.380 | 7ung.382 | 7ung.386 | 7ung.388 | 7ung.390 | 7ung.392 | 7ung.394 | 7ung.396 | 7vmg.1 | 7vmj.1 | 7vmk.1 | 7xqx.1 | 7xqy.1 | 7xr0.1 | 7xr1.1 | 7z2n.1 | 7z2p.1 | 7z7d.1 | 7zx2.1 | 7zyw.1 | 8a0l.1 | 8a9t.1 | 8a9z.1 | 8ahm.1 | 8b7a.1 | 8b7b.1 | 8b7c.1 | 8bde.1 | 8bdf.1 | 8bdg.1 | 8c0f.1 | 8cld.1 | 8diq.1 | 8huh.1 | 8j07.165 | 8j07.167 | 8j07.169 | 8j07.171 | 8j07.173 | 8j07.175 | 8j07.177 | 8j07.179 | 8j07.181 | 8j07.183 | 8j07.185 | 8j07.187 | 8j07.189 | 8j07.191 | 8j07.193 | 8j07.195 | 8j07.197 | 8j07.199 | 8j07.201 | 8j07.203 | 8j07.205 | 8j07.207 | 8j07.209 | 8j07.211 | 8j07.213 | 8j07.215 | 8j07.218 | 8j07.220 | 8j07.222 | 8j07.224 | 8j07.226 | 8j07.228 | 8j07.230 | 8j07.232 | 8j07.234 | 8j07.236 | 8j07.238 | 8j07.240 | 8j07.244 | 8j07.246 | 8j07.248 | 8j07.250 | 8j07.252 | 8j07.254 | 8j07.256 | 8j07.258 | 8j07.260 | 8j07.262 | 8j07.264 | 8j07.266 | 8j07.270 | 8j07.272 | 8j07.274 | 8j07.276 | 8j07.278 | 8j07.280 | 8j07.282 | 8j07.284 | 8j07.286 | 8j07.288 | 8j07.290 | 8j07.292 | 8j07.296 | 8j07.298 | 8j07.300 | 8j07.302 | 8j07.304 | 8j07.306 | 8j07.308 | 8j07.310 | 8j07.312 | 8j07.314 | 8j07.316 | 8j07.318 | 8j07.322 | 8j07.324 | 8j07.326 | 8j07.328 | 8j07.330 | 8j07.332 | 8j07.334 | 8j07.336 | 8j07.338 | 8j07.340 | 8j07.342 | 8j07.344 | 8j07.347 | 8j07.349 | 8j07.351 | 8j07.353 | 8j07.355 | 8j07.357 | 8j07.359 | 8j07.361 | 8j07.363 | 8j07.365 | 8j07.367 | 8j07.369 | 8j07.371 | 8j07.374 | 8j07.376 | 8j07.378 | 8j07.380 | 8j07.382 | 8j07.384 | 8j07.386 | 8j07.388 | 8j07.390 | 8j07.392 | 8j07.394 | 8j07.396 | 8j07.398 | 8j07.401 | 8j07.403 | 8j07.405 | 8j07.407 | 8j07.409 | 8j07.411 | 8j07.413 | 8j07.415 | 8j07.417 | 8j07.419 | 8j07.421 | 8j07.423 | 8j07.427 | 8j07.429 | 8j07.431 | 8j07.433 | 8j07.435 | 8j07.437 | 8j07.439 | 8j07.441 | 8j07.443 | 8j07.445 | 8j07.447 | 8j07.449 | 8j07.453 | 8j07.455 | 8j07.457 | 8j07.459 | 8j07.461 | 8j07.463 | 8j07.465 | 8j07.467 | 8j07.469 | 8j07.471 | 8j07.473 | 8j07.475 | 8j07.478 | 8j07.479 | 8j07.481 | 8j07.483 | 8j07.485 | 8j07.487 | 8j07.489 | 8j07.491 | 8j07.493 | 8j07.495 | 8j07.497 | 8j07.499 | 8j07.501 | 8j07.504 | 8j07.506 | 8j07.508 | 8j07.510 | 8j07.512 | 8j07.514 | 8j07.516 | 8j07.518 | 8j07.520 | 8j07.522 | 8j07.524 | 8j07.526 | 8j07.530 | 8j07.532 | 8j07.534 | 8j07.536 | 8j07.538 | 8j07.540 | 8j07.542 | 8j07.544 | 8j07.546 | 8j07.548 | 8j07.550 | 8j07.552 | 8j07.554 | 8j07.556 | 8j07.558 | 8j07.560 | 8j07.562 | 8j07.564 | 8j07.566 | 8j07.568 | 8j07.570 | 8j07.572 | 8j07.574 | 8j07.576 | 8j07.578 | 8j07.580 | 8j07.582 | 8j07.584 | 8j07.586 | 8j07.588 | 8j07.590 | 8j07.592 | 8j07.594 | 8j07.596 | 8j07.598 | 8j07.600 | 8j07.602 | 8j07.604 | 8j07.606 | 8j07.608 | 8j07.610 | 8j07.612 | 8j07.614 | 8j07.616 | 8j07.618 | 8j07.620 | 8j07.622 | 8j07.624 | 8j07.626 | 8j07.628 | 8j07.630 | 8j07.632 | 8j07.635 | 8j07.637 | 8j07.639 | 8j07.641 | 8j07.643 | 8j07.645 | 8j07.647 | 8j07.649 | 8j07.651 | 8j07.653 | 8j07.655 | 8j07.657 | 8j07.660 | 8j07.662 | 8j07.664 | 8j07.666 | 8j07.668 | 8j07.670 | 8j07.672 | 8j07.674 | 8j07.676 | 8j07.678 | 8j07.680 | 8j07.682 | 8j07.686 | 8j07.688 | 8j07.690 | 8j07.692 | 8j07.694 | 8j07.696 | 8j07.698 | 8j07.700 | 8j07.702 | 8j07.704 | 8j07.706 | 8j07.708 | 8j07.712 | 8j07.714 | 8j07.716 | 8j07.718 | 8j07.720 | 8j07.722 | 8j07.724 | 8j07.726 | 8j07.728 | 8j07.730 | 8j07.732 | 8j07.734 | 8j07.737 | 8j07.739 | 8j07.741 | 8j07.743 | 8j07.745 | 8j07.747 | 8j07.749 | 8j07.751 | 8j07.753 | 8j07.755 | 8j07.757 | 8j07.759 | 8r67.1 | 8riv.1 | 8riw.1 | 8sh7.1 | 8to0.4 | 8to0.6 | 8to0.8 | 8to0.10 | 8to0.12 | 8to0.14 | 8to0.16 | 8to0.27 | 8to0.30 | 8to0.32 | 8to0.34 | 8to0.36 | 8to0.38 | 8to0.40 | 8to0.51 | 8to0.53 | 8to0.56 | 8to0.58 | 8to0.60 | 8to0.63 | 8to0.65 | 8to0.74 | 8to0.76 | 8to0.78 | 8to0.80 | 8to0.83 | 8to0.85 | 8to0.87 | 8to0.94 | 8to0.96 | 8to0.98 | 8to0.100 | 8to0.102 | 8to0.104 | 8to0.113 | 8to0.116 | 8to0.119 | 8to0.121 | 8to0.123 | 8to0.125 | 8to0.127 | 8to0.129 | 8to0.131 | 8to0.133 | 8to0.136 | 8to0.138 | 8to0.140 | 8to0.142 | 8to0.144 | 8to0.146 | 8to0.148 | 8to0.150 | 8to0.152 | 8to0.155 | 8to0.157 | 8to0.159 | 8to0.161 | 8to0.164 | 8to0.166 | 8to0.168 | 8to0.170 | 8to0.172 | 8to0.174 | 8to0.176 | 8to0.178 | 8to0.182 | 8to0.184 | 8to0.187 | 8to0.190 | 8to0.193 | 8to0.195 | 8to0.197 | 8to0.199 | 8to0.201 | 8to0.203 | 8to0.205 | 8to0.207 | 8to0.209 | 8to0.212 | 8to0.214 | 8to0.217 | 8to0.219 | 8to0.221 | 8to0.223 | 8to0.226 | 8to0.228 | 8to0.230 | 8to0.232 | 8to0.234 | 8to0.236 | 8to0.238 | 8to0.240 | 8to0.242 | 8to0.245 | 8to0.248 | 8to0.250 | 8to0.252 | 8to0.254 | 8to0.256 | 8to0.257 | 8to0.259 | 8to0.261 | 8to0.263 | 8to0.265 | 8to0.266 | 8to0.268 | 8to0.271 | 8to0.273 | 8to0.275 | 8to0.277 | 8to0.279 | 8to0.280 | 8to0.282 | 8to0.284 | 8to0.286 | 8to0.288 | 8to0.290 | 8to0.292 | 8to0.293 | 8to0.295 | 8to0.298 | 8to0.300 | 8to0.302 | 8to0.304 | 8to0.306 | 8to0.308 | 8to0.310 | 8to0.323 | 8to0.324 | 8to0.326 | 8to0.328 | 8to0.330 | 8to0.332 | 8to0.335 | 8to0.337 | 8to0.339 | 8to0.341 | 8to0.343 | 8to0.345 | 8to0.347 | 8to0.349 | 8to0.352 | 8to0.354 | 8to0.356 | 8to0.358 | 8to0.378 | 8to0.430 | 8to0.464 | 8to0.466 | 8zb8.1 | 9fyd.1