SMTL ID : 6y4n.1

Structure of Tubulin Tyrosine Ligase in Complex with Tb116

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.85 Å
Oligo State
hetero-2-2-1-1-mer
Ligands
3 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
5 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
2 x CA: CALCIUM ION(Non-covalent)
1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
1 x O9B: (2~{R})-1-methylpiperidine-2-carboxylic acid(Non-covalent)
1 x O9K: [(1~{R},3~{R})-1-(4-methanoyl-1,3-thiazol-2-yl)-4-methyl-3-(methylamino)pentyl] ethanoate(Non-covalent)
1 x O9N: methyl (2~{S},4~{S})-2,4-bis(azanyl)-5-phenyl-pentanoate(Non-covalent)
1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
1 x VAL: VALINE(Non-covalent)
1 x P6S: benzyl hydrogen carbonate(Non-covalent)
1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Nicolaou, K.C. et al., Design, Synthesis, and Biological Evaluation of Tubulysin Analogues, Linker-Drugs, and Antibody-Drug Conjugates, Insights into Structure-Activity Relationships, and Tubulysin-Tubulin Binding Derived from X-ray Crystallographic Analysis. J.Org.Chem. (2021)
Release Date
2021-03-31
Peptides
Tubulin alpha-1B chain: AC
Tubulin beta chain: BD
Stathmin-4: E
Tubulin-Tyrosine Ligase: F
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
C
B
B
D
D
E
E
F
F

Tubulin alpha-1B chain

Tubulin beta chain

Stathmin-4

Tubulin-Tyrosine Ligase

Related Entries With Identical Sequence

1ffx.1 | 1ia0.1 | 1jff.1 | 1sa0.1 | 1sa1.1 | 2hxf.1 | 2hxh.1 | 2p4n.1 | 2wbe.2 | 3dco.1 | 3edl.1 | 3edl.2 | 3iz0.1 | 3j2u.1 | 3j2u.2 | 3j6p.1 | 3j7i.1 | 3j8x.1 | 3j8y.1 | 3jak.1 | 3jal.1 | 3jao.1 | 3jao.2 | 3jar.1 | 3jas.1 | 3jat.1 | 3jaw.1 | 3ryc.1 | 3ryf.1 | 3ryh.1  more...