SMTL ID : 5lcv.1

Structural basis of Zika and Dengue virus potent antibody cross-neutralization

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

hetero-2-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 11 residues within 4Å: Chain B: H.148, G.150, M.151, V.153, N.154, T.156, D.161 Chain C: S.28, N.31, F.103, S.107 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.161

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: G.150, M.151, V.153, N.154 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: D.37, K.38, L.298, R.299, L.300 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.37, A:K.38, A:R.299, A:L.300 GOL.4: 5 residues within 4Å: Chain A: H.323, T.325, R.357, D.379, R.402 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.323, A:R.357, A:D.379, A:R.402, A:R.402 GOL.6: 5 residues within 4Å: Chain B: F.11, H.323, T.325, R.357, D.379 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.323, B:R.357

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 5 residues within 4Å: Chain A: E.79, R.94, T.95, L.96, S.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.79, A:S.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barba-Spaeth, G. et al., Structural basis of potent Zika-dengue virus antibody cross-neutralization. Nature (2016)

Release Date

2016-07-06

Peptides

Polyprotein: AB
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11: C
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

Polyprotein

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11

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