SMTL ID : 5lhb.1

POLYADPRIBOSYL GLYCOSIDASE IN COMPLEX WITH PDD00017262

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x 6WJ: 1-(cyclopropylmethyl)-6-[[(1-methylcyclopropyl)amino]-bis(oxidanyl)-$l^{4}-sulfanyl]-3-[(2-methyl-1,3-thiazol-5-yl)methyl]quinazoline-2,4-dione(Non-covalent)

6WJ.1: 14 residues within 4Å: Chain A: T.280, I.281, E.282, Q.309, I.312, R.313, I.316, Y.347, Y.350, N.424, T.456, F.457, G.458, D.459 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.313, A:I.316, A:F.457 Hydrogen bonds: A:I.281, A:E.282, A:Q.309, A:N.424 pi-Stacking: A:Y.350, A:F.457, A:F.457, A:F.457

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: E.264, R.265, C.266, E.267, T.479, G.481, D.482, K.485 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.265, A:G.481, A:D.482, A:D.482 Water bridges: A:D.482 Salt bridges: A:K.485 SO4.3: 5 residues within 4Å: Chain A: R.90, Y.119, P.198, R.199, N.201 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.119, A:R.199, A:N.201 Salt bridges: A:R.90, A:R.199 SO4.4: 2 residues within 4Å: Chain A: P.393, R.397 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.394 Salt bridges: A:R.397

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 6 residues within 4Å: Chain A: P.31, V.37, I.39, R.40, V.41, F.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.41 pi-Cation interactions: A:F.53 DMS.6: 7 residues within 4Å: Chain A: Y.76, R.90, L.93, K.114, Y.115, N.116, V.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.90, A:V.117 Water bridges: A:A.118 DMS.7: 5 residues within 4Å: Chain A: P.212, D.213, F.297, G.300, R.324 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.213, A:R.324, A:R.324 Salt bridges: A:D.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

James, D.I. et al., First-in-Class Chemical Probes against Poly(ADP-ribose) Glycohydrolase (PARG) Inhibit DNA Repair with Differential Pharmacology to Olaparib. ACS Chem. Biol. (2016)

Release Date

2016-10-12

Peptides

Poly(ADP-ribose) glycohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly(ADP-ribose) glycohydrolase

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