SMTL ID : 5mqv.1 (5 other biounits)

Crystal structure of human Casein Kinase I delta in complex with 4-(2,5-Dimethoxyphenyl)-N-(4-(5-(4-fluorphenyl)-2-(methylthio)-1H-imidazol-4-yl)-pyridin-2-yl)-1-methyl-1H-pyrrole-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x D5Q: 4-(2,5-Dimethoxyphenyl)-N-(4-(5-(4-fluorphenyl)-2-(methylthio)-1H-imidazol-4-yl)-pyridin-2-yl)-1-methyl-1H-pyrrole-2-carboxamide(Non-covalent)

D5Q.1: 24 residues within 4Å: Chain A: R.33, I.35, G.36, S.37, G.38, I.43, L.45, A.56, I.57, K.58, Y.76, I.88, M.100, V.101, M.102, E.103, L.104, L.105, G.106, P.107, D.111, L.155, L.158, I.168 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.43, A:I.43, A:A.56, A:M.102, A:P.107, A:L.155 Hydrogen bonds: A:L.105, A:L.105

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: P.265, S.266, E.267, L.296, R.299 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.266, A:S.266, A:S.266 Salt bridges: A:R.299 PO4.3: 6 residues within 4Å: Chain A: E.137, K.283, D.285, Y.286, S.287, R.290 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.137, A:Y.286, A:S.287, A:S.287, A:R.290 Salt bridges: A:K.283 PO4.4: 6 residues within 4Å: Chain A: R.198, Q.234, G.235, L.236, K.244, I.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.235 Water bridges: A:L.236 Salt bridges: A:R.198, A:K.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halekotte, J. et al., Optimized 4,5-Diarylimidazoles as Potent/Selective Inhibitors of Protein Kinase CK1 delta and Their Structural Relation to p38 alpha MAPK. Molecules (2017)

Release Date

2017-04-05

Peptides

Casein kinase I isoform delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase I isoform delta

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