SMTL ID : 6f1w.1 (1 other biounit)

Crystal structure of human Casein Kinase I delta in complex with compound 31a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.147, K.174, K.191, T.194, E.209 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.209 Water bridges: A:R.147, A:K.191, A:K.191 Salt bridges: A:R.147, A:K.174, A:K.191 SO4.2: 5 residues within 4Å: Chain A: R.198, Q.234, G.235, K.244, I.248 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.235 Water bridges: A:R.198, A:R.198, A:R.198, A:R.198, A:Q.234, A:L.236, A:L.236, A:K.244, A:K.244 Salt bridges: A:R.198, A:K.244 SO4.3: 6 residues within 4Å: Chain A: Y.176, R.177, H.182, H.184, R.212, K.283 4 PLIP interactions: 4 interactions with chain A Water bridges: A:H.182 Salt bridges: A:R.177, A:H.184, A:R.212 SO4.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.5: 4 residues within 4Å: Chain A: S.287, R.290, Q.291, R.294 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.287, A:S.287 Salt bridges: A:R.290, A:R.294 SO4.6: 5 residues within 4Å: Chain A: Y.187, R.213, R.279, F.280, D.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.280 Water bridges: A:R.213, A:D.281 Salt bridges: A:R.213 SO4.7: 4 residues within 4Å: Chain A: S.141, R.177, H.182, K.283 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.177, A:H.182, A:K.283

1 x CG5: (9~{R},10~{R},11~{S})-~{N}-[4-[3-(4-fluorophenyl)-5-propan-2-yl-1,2-oxazol-4-yl]pyridin-2-yl]-4-(4-methoxyphenyl)-10,11-bis(oxidanyl)-1,7-diazatricyclo[7.3.0.0^{3,7}]dodeca-3,5-diene-6-carboxamide(Non-covalent)

CG5.8: 25 residues within 4Å: Chain A: I.35, G.36, S.37, G.38, I.43, L.45, A.56, I.57, K.58, Y.76, I.88, M.100, V.101, M.102, E.103, L.104, L.105, G.106, P.107, S.108, D.111, D.152, L.155, L.158, I.168 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.43, A:A.56, A:K.58, A:M.102, A:L.155, A:I.168 Hydrogen bonds: A:I.35, A:L.105, A:L.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luxenburger, A. et al., Design, Synthesis and Biological Evaluation of Isoxazole-Based CK1 Inhibitors Modified with Chiral Pyrrolidine Scaffolds. Molecules (2019)

Release Date

2019-03-13

Peptides

Casein kinase I isoform delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase I isoform delta

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