SMTL ID : 5okt.2 (3 other biounits)

Crystal structure of human Casein Kinase I delta in complex with IWP-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

monomer

Ligands

1 x 9XK: ~{N}-(6-methyl-1,3-benzothiazol-2-yl)-2-[(4-oxidanylidene-3-phenyl-6,7-dihydrothieno[3,2-d]pyrimidin-2-yl)sulfanyl]ethanamide(Non-covalent)

9XK.1: 18 residues within 4Å: Chain A: I.35, I.43, L.45, E.54, A.56, K.58, Y.76, P.86, M.100, M.102, E.103, L.104, L.105, G.106, P.107, L.155, I.168, D.169 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.43, A:L.45, A:A.56, A:M.102, A:L.104, A:L.105 Hydrogen bonds: A:L.105, A:L.105

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: S.287, R.290, R.294 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.287 Water bridges: A:R.290, A:R.290 Salt bridges: A:R.290, A:R.294 SO4.3: 5 residues within 4Å: Chain A: R.198, Q.234, G.235, K.244, I.248 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.235 Water bridges: A:L.236, A:K.244 Salt bridges: A:R.198, A:K.244 SO4.4: 4 residues within 4Å: Chain A: R.147, K.174, N.190, E.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.190 Salt bridges: A:R.147

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 11 residues within 4Å: Chain A: G.81, G.82, V.83, G.84, I.85, P.86, T.87, E.103, K.161, L.164, Y.166 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.84, A:I.85, A:T.87, A:E.103, A:K.161, A:Y.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Reyes, B. et al., Discovery of Inhibitor of Wnt Production 2 (IWP-2) and Related Compounds As Selective ATP-Competitive Inhibitors of Casein Kinase 1 (CK1) delta / epsilon. J. Med. Chem. (2018)

Release Date

2018-04-25

Peptides

Casein kinase I isoform delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Casein kinase I isoform delta

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