SMTL ID : 6f26.1 (1 other biounit)

Crystal structure of human Casein Kinase I delta in complex with compound 31b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.147, K.174, K.191, T.194, E.209 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.191, A:K.191 Salt bridges: A:R.147, A:K.174, A:K.191 SO4.2: 6 residues within 4Å: Chain A: R.198, Q.234, G.235, L.236, K.244, I.248 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.235 Water bridges: A:R.198, A:R.198, A:R.198 Salt bridges: A:R.198, A:K.244 SO4.3: 3 residues within 4Å: Chain A: S.287, R.290, R.294 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.287 Water bridges: A:R.290 Salt bridges: A:R.290, A:R.294 SO4.4: 3 residues within 4Å: Chain A: T.270, N.273 Ligands: SO4.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.270, A:T.270, A:N.273 Water bridges: A:T.270, A:T.270 SO4.5: 7 residues within 4Å: Chain A: Y.176, R.177, H.182, H.184, R.212, D.281, K.283 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.281, A:K.283 Salt bridges: A:R.177, A:H.182, A:R.212 SO4.6: 4 residues within 4Å: Chain A: S.141, R.177, H.182, K.283 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.212, A:K.283, A:K.283, A:K.283 Salt bridges: A:R.177, A:H.182, A:K.283 SO4.7: 3 residues within 4Å: Chain A: K.123, F.302, S.303 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.303, A:S.303, A:S.303 Salt bridges: A:K.123 SO4.8: 4 residues within 4Å: Chain A: T.270, Y.288, L.292 Ligands: SO4.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.288 SO4.9: 3 residues within 4Å: Chain A: F.274, D.285, Y.288 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.285 SO4.10: 4 residues within 4Å: Chain A: P.107, L.112, F.115, W.310 No protein-ligand interaction detected (PLIP) SO4.11: 5 residues within 4Å: Chain A: P.265, S.266, E.267, L.296, R.299 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.266, A:S.266, A:S.266 Salt bridges: A:R.299 SO4.12: 5 residues within 4Å: Chain A: T.196, A.197, R.198, K.244, Y.245 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.195, A:A.197, A:Y.245 Water bridges: A:R.198 SO4.13: 3 residues within 4Å: Chain A: R.213, R.279, F.280 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.213, A:F.280 Water bridges: A:R.213 Salt bridges: A:R.279

1 x C9Z: (9~{S},10~{S},11~{R})-~{N}-[4-[3-(4-fluorophenyl)-5-propan-2-yl-1,2-oxazol-4-yl]pyridin-2-yl]-4-(4-methoxyphenyl)-10,11-bis(oxidanyl)-1,7-diazatricyclo[7.3.0.0^{3,7}]dodeca-3,5-diene-6-carboxamide(Non-covalent)

C9Z.14: 24 residues within 4Å: Chain A: I.35, G.36, I.43, L.45, E.54, A.56, I.57, K.58, Y.76, I.88, M.100, V.101, M.102, E.103, L.104, L.105, G.106, P.107, S.108, D.111, D.152, L.155, L.158, I.168 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.43, A:A.56, A:K.58, A:K.58, A:M.102, A:L.155, A:L.158, A:I.168 Hydrogen bonds: A:L.105, A:L.105 Water bridges: A:I.35, A:S.108, A:D.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luxenburger, A. et al., Design, Synthesis and Biological Evaluation of Isoxazole-Based CK1 Inhibitors Modified with Chiral Pyrrolidine Scaffolds. Molecules (2019)

Release Date

2019-03-13

Peptides

Casein kinase I isoform delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase I isoform delta

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