SMTL ID : 5n9c.1

ENAH EVH1 in complex with Ac-[2-Cl-F]-PP-[ProM-1]-OH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.16 Å

Oligo State

homo-dimer

Ligands

4 x ACE- 2L5- PRO- PRO- 92B: Ac-[2-Cl-F]-PP-[ProM-1]-OH(Non-covalent)

ACE-2L5-PRO-PRO-92B.1: 13 residues within 4Å: Chain A: M.16, Y.18, W.25, K.71, N.73, A.75, T.76, F.79, Q.81, W.82, R.83, V.88, N.92 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.18, A:Y.18, A:W.25, A:K.71, A:N.73, A:F.79, A:F.79, A:F.79, A:R.83 Hydrogen bonds: A:W.25, A:Q.81, A:R.83, A:R.83 ACE-2L5-PRO-PRO-92B.2: 13 residues within 4Å: Chain B: M.16, Y.18, W.25, K.71, N.73, A.75, T.76, F.79, Q.81, W.82, R.83, V.88, N.92 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.18, B:Y.18, B:W.25, B:K.71, B:N.73, B:F.79, B:F.79, B:F.79 Hydrogen bonds: B:W.25, B:Q.81, B:R.83, B:R.83 Water bridges: B:N.73, B:N.73 pi-Cation interactions: B:R.83 ACE-2L5-PRO-PRO-92B.3: 9 residues within 4Å: Chain B: E.5, Y.40, R.49, V.51, R.53, V.60, N.63, C.64, A.65 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.49, B:R.49, B:R.53, B:N.63 Water bridges: B:R.53 pi-Stacking: B:Y.40 ACE-2L5-PRO-PRO-92B.4: 10 residues within 4Å: Chain A: G.1, E.5, Y.40, R.49, V.51, R.53, V.60, N.63, C.64, A.65 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.40 Hydrogen bonds: A:R.49, A:R.49, A:R.53, A:N.63

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: R.36, H.38, R.53 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.38, A:R.53, A:R.53 Salt bridges: A:R.36, A:H.38 SO4.9: 3 residues within 4Å: Chain B: R.36, H.38, R.53 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.36, B:R.53, B:R.53 Salt bridges: B:R.36, B:H.38 SO4.10: 3 residues within 4Å: Chain A: Q.77 Chain B: T.76, Q.77 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.77, B:Q.77, A:Q.77 Water bridges: B:T.78

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: A.28, G.29, Q.59, V.60, V.61, I.62, N.63 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.29 Water bridges: A:N.63, A:N.63, A:N.63, A:N.63 GOL.11: 7 residues within 4Å: Chain B: A.28, G.29, Q.59, V.60, V.61, I.62, N.63 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.29 Water bridges: B:N.63, B:N.63

3 x NO3: NITRATE ION(Non-functional Binders)

NO3.7: 2 residues within 4Å: Chain A: T.76, Q.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.77, A:Q.77 NO3.8: 6 residues within 4Å: Chain A: Q.10, A.11, R.12, R.36, I.55, D.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.12, A:R.12, A:R.36, A:R.36, A:D.98 NO3.12: 6 residues within 4Å: Chain B: Q.10, A.11, R.12, R.36, I.55, D.98 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.11, B:R.12, B:R.12, B:R.36, B:R.36 Water bridges: B:D.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barone, M. et al., Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2017-06-14

Peptides

Protein enabled homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein enabled homolog

Related Entries With Identical Sequence