SMTL ID : 5ncg.1 (1 other biounit)

ENAH EVH1 in complex with Ac-[2-Cl-F]-[ProM-2]-[ProM-9]-OH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.02 Å

Oligo State

monomer

Ligands

3 x 8TB: (3~{S},7~{R},10~{R},11~{R},13~{S})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-11-methyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid(Non-covalent)

8TB.1: 13 residues within 4Å: Chain A: M.16, Y.18, W.25, K.71, N.73, A.75, T.76, F.79, Q.81, W.82, R.83, V.88, N.92 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.18, A:W.25, A:N.73, A:F.79, A:F.79, A:V.88 Hydrogen bonds: A:W.25, A:Q.81, A:R.83 8TB.2: 13 residues within 4Å: Chain A: S.2, M.3, E.5, Q.6, S.7, H.38, Y.40, R.49, V.51, R.53, V.60, N.63 Ligands: NO3.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.5 Hydrogen bonds: A:R.49, A:R.49, A:N.63 Salt bridges: A:R.49 8TB.3: 11 residues within 4Å: Chain A: V.17, A.28, G.29, Q.59, V.60, V.61, I.62, N.63, R.86, Q.87, Y.89 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.60, A:N.63, A:R.86 Hydrogen bonds: A:R.86 Water bridges: A:Q.59 Halogen bonds: A:Q.87

3 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 4 residues within 4Å: Chain A: S.7, H.38 Ligands: 8TB.2, NO3.6 No protein-ligand interaction detected (PLIP) NO3.5: 6 residues within 4Å: Chain A: G.1, S.4, H.42, T.43, G.44, N.45 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.1, A:S.4, A:H.42, A:G.44, A:N.45 NO3.6: 3 residues within 4Å: Chain A: Q.10, H.38 Ligands: NO3.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.10, A:Q.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barone, M. et al., Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2018-03-21

Peptides

Protein enabled homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein enabled homolog

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