SMTL ID : 6rd2.1 (1 other biounit)

ENAH EVH1 in complex with Ac-[2-Cl-F]-[ProM-2]-[ProM-1]-TEDEL-NH2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

1 x THR- GLU- ASP- GLU- NLW: THR-GLU-ASP-GLU-NLW(Non-covalent)

THR-GLU-ASP-GLU-NLW.1: 8 residues within 4Å: Chain A: A.14, M.16, K.24, W.25, P.27, T.32, N.92 Ligands: K1N.9 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.24 Hydrogen bonds: A:W.25 Water bridges: A:T.32, A:G.33

6 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 6 residues within 4Å: Chain A: Q.10, A.11, R.12, R.36, I.55, D.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.11, A:R.12, A:R.12, A:R.36, A:R.36 NO3.3: 3 residues within 4Å: Chain A: R.36, H.38, R.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.36, A:H.38 Water bridges: A:R.53 NO3.4: 8 residues within 4Å: Chain A: T.32, G.33, F.34, K.54, I.55, Q.56, D.57 Ligands: NO3.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.32, A:F.34, A:K.54, A:I.55, A:Q.56 NO3.5: 5 residues within 4Å: Chain A: S.31, K.54, Q.56, D.57 Ligands: NO3.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.31, A:S.31, A:K.54, A:Q.56, A:D.57 NO3.6: 3 residues within 4Å: Chain A: N.100, A.103, S.104 No protein-ligand interaction detected (PLIP) NO3.7: 2 residues within 4Å: Chain A: T.76, Q.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.77, A:Q.77

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 6 residues within 4Å: Chain A: A.28, G.29, V.60, V.61, I.62, N.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.61, A:N.63

1 x K1N: (3~{S},7~{R},10~{R},13~{S})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid(Non-covalent)

K1N.9: 16 residues within 4Å: Chain A: M.16, Y.18, W.25, K.71, N.73, A.75, T.76, F.79, Q.81, W.82, R.83, V.88, N.92 Ligands: THR-GLU-ASP-GLU-NLW.1, THR-GLU-ASP-GLU-NLW.1, THR-GLU-ASP-GLU-NLW.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.18, A:Y.18, A:W.25, A:K.71, A:K.71, A:N.73, A:T.76, A:F.79, A:F.79, A:R.83 Hydrogen bonds: A:W.25, A:Q.81, A:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barone, M. et al., Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-05-13

Peptides

Protein enabled homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein enabled homolog

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