- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.17 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x DLS- PRO- DAL- CYS- DTY- ALA- DCY- LYS- ALA: DLS-PRO-ALD-CYS-TYD-ALA-CYD-LYS-ALA(Non-covalent)
- 3 x LYS: Fragment of bicycle(Non-covalent)(Non-functional Binders)
- 8 x CA: CALCIUM ION(Non-covalent)
CA.5: 6 residues within 4Å:- Chain A: E.95, D.99, D.101, D.104
- Ligands: CA.6, ZDC.15
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.95, A:E.95, A:D.99, A:D.101, A:D.104
CA.6: 7 residues within 4Å:- Chain A: N.21, D.101, N.103, D.104
- Chain C: G.114
- Ligands: CA.5, ZDC.15
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain C- Metal complexes: A:N.21, A:D.101, A:D.104, C:G.114
CA.7: 6 residues within 4Å:- Chain B: E.95, D.99, D.101, D.104
- Ligands: CA.8, ZDC.16
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.95, B:E.95, B:D.99, B:D.101, B:D.104
CA.8: 7 residues within 4Å:- Chain B: N.21, D.101, N.103, D.104
- Chain D: G.114
- Ligands: CA.7, ZDC.16
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain D- Metal complexes: B:N.21, B:D.101, B:D.104, D:G.114
CA.9: 7 residues within 4Å:- Chain A: G.114
- Chain C: N.21, D.101, N.103, D.104
- Ligands: CA.10, ZDC.13
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain C- Metal complexes: A:G.114, C:N.21, C:D.101, C:D.104
CA.10: 6 residues within 4Å:- Chain C: E.95, D.99, D.101, D.104
- Ligands: CA.9, ZDC.13
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.95, C:E.95, C:D.99, C:D.101, C:D.104
CA.11: 7 residues within 4Å:- Chain B: G.114
- Chain D: N.21, D.101, N.103, D.104
- Ligands: CA.12, ZDC.14
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain D- Metal complexes: B:G.114, D:N.21, D:D.101, D:D.104
CA.12: 6 residues within 4Å:- Chain D: E.95, D.99, D.101, D.104
- Ligands: CA.11, ZDC.14
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:E.95, D:E.95, D:D.99, D:D.101, D:D.104
- 4 x ZDC: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid(Non-covalent)
ZDC.13: 12 residues within 4Å:- Chain A: G.114
- Chain C: N.21, S.22, S.23, E.95, D.96, D.99, D.101, D.104
- Ligands: DLS-PRO-DAL-CYS-DTY-ALA-DCY-LYS-ALA.1, CA.9, CA.10
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:S.23, C:D.99, C:D.104, A:G.114
- Water bridges: C:S.23
ZDC.14: 13 residues within 4Å:- Chain B: G.114
- Chain D: N.21, S.22, S.23, E.95, D.96, G.97, D.99, D.101, D.104
- Ligands: LYS.2, CA.11, CA.12
6 PLIP interactions:1 interactions with chain B, 4 interactions with chain D, 1 Ligand-Ligand interactions- Hydrogen bonds: B:G.114, D:S.23, D:D.99, D:D.104
- Water bridges: D:D.99, K.2
ZDC.15: 12 residues within 4Å:- Chain A: N.21, S.22, S.23, E.95, D.96, D.99, D.101, D.104
- Chain C: G.114
- Ligands: LYS.3, CA.5, CA.6
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:S.23, A:S.23, A:D.99, A:D.104, C:G.114
ZDC.16: 13 residues within 4Å:- Chain B: N.21, S.22, S.23, T.45, E.95, D.96, D.99, D.101, D.104
- Chain D: G.114
- Ligands: LYS.4, CA.7, CA.8
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: B:T.45
- Hydrogen bonds: B:S.23, B:D.99, B:D.104, D:G.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Di Bonaventura, I. et al., Chemical space guided discovery of antimicrobial bridged bicyclic peptides against Pseudomonas aeruginosa and its biofilms. Chem Sci (2017)
- Release Date
- 2017-08-23
- Peptides
- Fucose-binding lectin II (PA-IIL): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.17 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x DLS- PRO- DAL- CYS- DTY- ALA- DCY- LYS- ALA: DLS-PRO-ALD-CYS-TYD-ALA-CYD-LYS-ALA(Non-covalent)
- 3 x LYS: Fragment of bicycle(Non-covalent)(Non-functional Binders)
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x ZDC: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Di Bonaventura, I. et al., Chemical space guided discovery of antimicrobial bridged bicyclic peptides against Pseudomonas aeruginosa and its biofilms. Chem Sci (2017)
- Release Date
- 2017-08-23
- Peptides
- Fucose-binding lectin II (PA-IIL): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D