- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 3 residues within 4Å:- Chain A: N.11, S.13, A.14
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.11
NAG.5: 4 residues within 4Å:- Chain A: L.279, E.282, N.286, F.323
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:L.279, A:E.282
- Hydrogen bonds: A:E.282, A:E.282, A:E.282, A:N.286, A:F.323
- Water bridges: A:F.323, A:F.323, A:F.323
NAG.6: 3 residues within 4Å:- Chain A: N.141, T.143, L.144
3 PLIP interactions:3 interactions with chain A- Water bridges: A:N.141, A:N.141, A:E.142
NAG.7: 7 residues within 4Å:- Chain A: F.155, G.156, G.157, N.161, L.162, T.163, Q.213
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.162
- Hydrogen bonds: A:T.163, A:Q.213
- Water bridges: A:N.161, A:N.161, A:L.162
NAG.8: 4 residues within 4Å:- Chain A: H.118, A.132, F.133, N.182
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:A.132
- Hydrogen bonds: A:F.133, A:N.182
- Water bridges: A:S.184, A:R.257
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 5 residues within 4Å:- Chain A: D.206, R.208, D.230, D.231, F.232
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.206
GOL.11: 3 residues within 4Å:- Chain A: F.140, Q.224, F.225
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.224
- Water bridges: A:D.139, A:F.140
GOL.12: 4 residues within 4Å:- Chain A: V.149, M.216, D.217, R.220
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.217, A:D.217, A:R.220
GOL.18: 3 residues within 4Å:- Chain A: W.24, F.225, R.227
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.227, A:R.227
GOL.19: 5 residues within 4Å:- Chain A: K.15, D.19, H.22, Y.47, E.65
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.19, A:E.65
- Water bridges: A:D.19, A:D.19
GOL.20: 3 residues within 4Å:- Chain A: N.136, H.138, D.139
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.139
- Water bridges: A:H.138
- 5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.13: 5 residues within 4Å:- Chain A: A.77, F.121, T.192, F.199
- Ligands: HEM.1
No protein-ligand interaction detected (PLIP)DMS.14: 6 residues within 4Å:- Chain A: F.76, P.277, M.280, Y.281, V.315, A.316
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.316
- Water bridges: A:Q.72
- pi-Cation interactions: A:F.76
DMS.15: 5 residues within 4Å:- Chain A: Y.151, F.155, E.167, F.170, H.251
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:E.167
DMS.16: 2 residues within 4Å:- Chain A: D.175, A.178
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:D.175
DMS.17: 2 residues within 4Å:- Chain A: F.133, P.181
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. Acs Chem.Biol. (2018)
- Release Date
- 2018-10-10
- Peptides
- UNSPECIFIC PEROXYGENASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. Acs Chem.Biol. (2018)
- Release Date
- 2018-10-10
- Peptides
- UNSPECIFIC PEROXYGENASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A