- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 2 residues within 4Å:- Chain A: N.11, K.15
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.11
NAG.5: 4 residues within 4Å:- Chain A: L.279, E.282, N.286, F.323
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:L.279, A:E.282
- Hydrogen bonds: A:E.282, A:E.282, A:E.282, A:N.286, A:F.323
- Water bridges: A:F.323, A:F.323, A:F.323
NAG.6: 3 residues within 4Å:- Chain A: N.141, T.143, L.144
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.141
NAG.7: 7 residues within 4Å:- Chain A: F.155, G.156, G.157, N.161, L.162, T.163, Q.213
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.162
- Hydrogen bonds: A:T.163, A:Q.213
- Water bridges: A:N.161, A:N.161
NAG.8: 4 residues within 4Å:- Chain A: H.118, A.132, F.133, N.182
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.133, A:N.182
- Water bridges: A:S.184
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x NPY: NAPHTHALENE(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.11: 5 residues within 4Å:- Chain A: D.206, R.208, D.230, D.231, F.232
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.206
- Water bridges: A:R.208
GOL.12: 2 residues within 4Å:- Chain A: Q.224, F.225
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.224
GOL.13: 5 residues within 4Å:- Chain A: F.145, V.149, M.216, D.217, R.220
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:M.216, A:R.220
- Water bridges: A:D.217, A:R.220
GOL.14: 6 residues within 4Å:- Chain A: K.15, L.16, D.19, H.22, Y.47, E.65
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.15, A:L.16
GOL.15: 7 residues within 4Å:- Chain A: V.186, D.187, R.257, D.268, T.270, S.271, K.283
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.257, A:T.270, A:K.283
- Water bridges: A:D.187, A:D.187, A:R.257
GOL.16: 4 residues within 4Å:- Chain A: N.136, H.138, D.139
- Ligands: MOH.18
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.139
GOL.17: 6 residues within 4Å:- Chain A: Q.147, D.150, Y.151, R.154, K.171
- Ligands: MOH.24
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.147, A:Q.147, A:D.150
- Water bridges: A:K.171, A:K.171
- 15 x MOH: METHANOL(Non-functional Binders)
MOH.18: 4 residues within 4Å:- Chain A: G.135, N.136, H.138
- Ligands: GOL.16
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.137
MOH.19: 3 residues within 4Å:- Chain A: A.178, T.179, I.262
No protein-ligand interaction detected (PLIP)MOH.20: 2 residues within 4Å:- Chain A: F.274, P.277
No protein-ligand interaction detected (PLIP)MOH.21: 2 residues within 4Å:- Chain A: V.244, F.274
No protein-ligand interaction detected (PLIP)MOH.22: 1 residues within 4Å:- Chain A: R.50
3 PLIP interactions:3 interactions with chain A- Water bridges: A:K.25, A:R.50, A:R.50
MOH.23: 2 residues within 4Å:- Chain A: P.49, N.51
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.51
MOH.24: 4 residues within 4Å:- Chain A: Y.151, R.154, K.171
- Ligands: GOL.17
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.151, A:R.154, A:R.154
MOH.25: 1 residues within 4Å:- Chain A: E.142
No protein-ligand interaction detected (PLIP)MOH.26: 3 residues within 4Å:- Chain A: K.15, L.16, F.233
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.16
MOH.27: 7 residues within 4Å:- Chain A: N.18, W.24, H.45, R.227, M.228, P.229, D.230
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.18, A:R.227, A:M.228
MOH.28: 3 residues within 4Å:- Chain A: L.16, D.19, E.20
2 PLIP interactions:2 interactions with chain A- Water bridges: A:N.18, A:D.19
MOH.29: 4 residues within 4Å:- Chain A: T.276, P.277, C.278, L.279
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:C.278, A:L.279
MOH.30: 1 residues within 4Å:- Chain A: T.143
No protein-ligand interaction detected (PLIP)MOH.31: 2 residues within 4Å:- Chain A: Q.58
- Ligands: MOH.32
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.58
MOH.32: 4 residues within 4Å:- Chain A: A.57, Q.58, N.61
- Ligands: MOH.31
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.57, A:N.61
- Water bridges: A:A.62
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. Acs Chem.Biol. (2018)
- Release Date
- 2018-12-12
- Peptides
- Aromatic peroxygenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x NPY: NAPHTHALENE(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 15 x MOH: METHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. Acs Chem.Biol. (2018)
- Release Date
- 2018-12-12
- Peptides
- Aromatic peroxygenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A