- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.23 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 2 residues within 4Å:- Chain A: N.11, S.13
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.11, A:S.13
NAG.5: 4 residues within 4Å:- Chain A: L.279, E.282, N.286, F.323
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.279, A:E.282
- Hydrogen bonds: A:E.282, A:E.282, A:N.286, A:F.323
- Water bridges: A:F.323
NAG.6: 4 residues within 4Å:- Chain A: N.141, T.143, L.144
- Ligands: MOH.20
2 PLIP interactions:2 interactions with chain A- Water bridges: A:N.141, A:N.141
NAG.7: 7 residues within 4Å:- Chain A: F.155, G.156, G.157, N.161, L.162, T.163, Q.213
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.162
- Hydrogen bonds: A:T.163, A:Q.213
- Water bridges: A:N.161, A:N.161, A:L.162
NAG.8: 4 residues within 4Å:- Chain A: H.118, F.133, N.182
- Ligands: MOH.23
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.182
- Water bridges: A:F.133, A:S.184, A:S.184
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 5 residues within 4Å:- Chain A: D.206, R.208, D.230, D.231, F.232
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.206
GOL.11: 3 residues within 4Å:- Chain A: F.140, Q.224, F.225
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.224
GOL.12: 3 residues within 4Å:- Chain A: M.216, D.217, R.220
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.217, A:D.217, A:R.220
GOL.32: 7 residues within 4Å:- Chain A: V.186, D.187, R.257, D.268, T.270, S.271, K.283
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.268, A:T.270, A:K.283
- Water bridges: A:R.257, A:R.257
- 5 x 1NP: 1-NAPHTHOL(Non-covalent)
1NP.13: 9 residues within 4Å:- Chain A: F.69, A.77, F.121, T.192, E.196, F.199
- Ligands: HEM.1, 1NP.14, 1NP.17
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:F.69, A:A.77, A:F.121, A:F.121, A:T.192, A:E.196
- Water bridges: A:E.196
- pi-Stacking: A:F.199, A:F.199
1NP.14: 10 residues within 4Å:- Chain A: F.191, G.195, S.240, G.241, V.244, F.274
- Ligands: 1NP.13, 1NP.15, 1NP.16, 1NP.17
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.274
1NP.15: 6 residues within 4Å:- Chain A: F.274, P.277, A.317
- Ligands: 1NP.14, 1NP.16, 1NP.17
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.277, A:P.277, A:A.317
1NP.16: 4 residues within 4Å:- Chain A: G.241, V.244
- Ligands: 1NP.14, 1NP.15
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.244
1NP.17: 8 residues within 4Å:- Chain A: F.191, P.277, M.280, G.314, A.316
- Ligands: 1NP.13, 1NP.14, 1NP.15
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.191, A:P.277
- Hydrogen bonds: A:G.314, A:A.316
- pi-Stacking: A:F.76, A:F.76
- 14 x MOH: METHANOL(Non-functional Binders)
MOH.18: 3 residues within 4Å:- Chain A: K.98, T.99, R.100
1 PLIP interactions:1 interactions with chain A- Water bridges: A:T.99
MOH.19: 1 residues within 4Å:- Chain A: R.301
No protein-ligand interaction detected (PLIP)MOH.20: 3 residues within 4Å:- Chain A: N.136, D.139
- Ligands: NAG.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.136, A:D.139
MOH.21: 3 residues within 4Å:- Chain A: N.136, H.138, D.139
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.136
MOH.22: 2 residues within 4Å:- Chain A: D.91, T.306
3 PLIP interactions:3 interactions with chain A- Water bridges: A:L.4, A:D.91, A:N.307
MOH.23: 3 residues within 4Å:- Chain A: G.119, S.184
- Ligands: NAG.8
3 PLIP interactions:3 interactions with chain A- Water bridges: A:G.119, A:T.120, A:S.184
MOH.24: 3 residues within 4Å:- Chain A: E.146, Q.147, D.150
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.146
- Water bridges: A:D.150
MOH.25: 1 residues within 4Å:- Chain A: Q.58
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.58
MOH.26: 1 residues within 4Å:- Chain A: E.142
1 PLIP interactions:1 interactions with chain A- Water bridges: A:E.142
MOH.27: 6 residues within 4Å:- Chain A: N.18, R.227, M.228, P.229, D.230
- Ligands: MOH.28
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.18, A:R.227, A:M.228
- Water bridges: A:S.221
MOH.28: 5 residues within 4Å:- Chain A: N.18, P.23, W.24, H.45
- Ligands: MOH.27
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.18, A:W.24
- Water bridges: A:N.18, A:W.24
MOH.29: 2 residues within 4Å:- Chain A: R.239, T.242
2 PLIP interactions:2 interactions with chain A- Water bridges: A:S.237, A:P.238
MOH.30: 3 residues within 4Å:- Chain A: P.49, N.51, V.53
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.53
- Water bridges: A:N.51, A:Q.58
MOH.31: 1 residues within 4Å:- Chain A: T.143
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. Acs Chem.Biol. (2018)
- Release Date
- 2018-12-12
- Peptides
- Aromatic peroxygenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.23 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 5 x 1NP: 1-NAPHTHOL(Non-covalent)
- 14 x MOH: METHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. Acs Chem.Biol. (2018)
- Release Date
- 2018-12-12
- Peptides
- Aromatic peroxygenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A