- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.13 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 2 residues within 4Å:- Chain A: N.11, S.13
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.13
- Water bridges: A:N.11, A:N.11
NAG.5: 4 residues within 4Å:- Chain A: L.279, E.282, N.286, F.323
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.279, A:E.282
- Hydrogen bonds: A:E.282, A:E.282, A:N.286, A:F.323
- Water bridges: A:F.323
NAG.6: 3 residues within 4Å:- Chain A: N.141, T.143, L.144
3 PLIP interactions:3 interactions with chain A- Water bridges: A:N.141, A:N.141, A:T.143
NAG.7: 8 residues within 4Å:- Chain A: F.155, G.156, G.157, N.161, L.162, T.163, Q.213
- Ligands: MOH.16
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.162
- Hydrogen bonds: A:T.163, A:Q.213
- Water bridges: A:N.161, A:N.161, A:L.162
NAG.8: 3 residues within 4Å:- Chain A: H.118, F.133, N.182
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.182
- Water bridges: A:F.133, A:S.184, A:R.257
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 4 residues within 4Å:- Chain A: V.149, M.216, D.217, R.220
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.217, A:R.220
- Water bridges: A:R.220
GOL.11: 6 residues within 4Å:- Chain A: D.206, R.208, D.230, D.231, F.232
- Ligands: MOH.37
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.206
GOL.12: 2 residues within 4Å:- Chain A: Q.224, F.225
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.224
- 2 x 1NP: 1-NAPHTHOL(Non-covalent)
1NP.13: 9 residues within 4Å:- Chain A: F.69, A.77, F.121, F.191, T.192, G.195, F.199
- Ligands: HEM.1, 1NP.14
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:F.69, A:A.77, A:F.121, A:F.121, A:T.192
- Hydrogen bonds: A:T.192, A:G.195
- pi-Stacking: A:F.199, A:F.199
1NP.14: 7 residues within 4Å:- Chain A: F.191, G.195, S.240, G.241, V.244, F.274
- Ligands: 1NP.13
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.274
- 23 x MOH: METHANOL(Non-functional Binders)
MOH.15: 4 residues within 4Å:- Chain A: T.276, P.277, C.278, L.279
Ligand excluded by PLIPMOH.16: 2 residues within 4Å:- Chain A: V.246
- Ligands: NAG.7
Ligand excluded by PLIPMOH.17: 2 residues within 4Å:- Chain A: T.276, L.279
Ligand excluded by PLIPMOH.18: 2 residues within 4Å:- Chain A: Q.58
- Ligands: MOH.29
Ligand excluded by PLIPMOH.19: 3 residues within 4Å:- Chain A: Y.151, R.154, K.171
Ligand excluded by PLIPMOH.20: 4 residues within 4Å:- Chain A: G.30, R.97, L.101
- Ligands: PO4.9
Ligand excluded by PLIPMOH.21: 5 residues within 4Å:- Chain A: V.186, D.187, R.257, D.268, K.283
Ligand excluded by PLIPMOH.22: 1 residues within 4Å:- Chain A: F.225
Ligand excluded by PLIPMOH.23: 6 residues within 4Å:- Chain A: I.32, R.33, G.96, R.97, N.116, H.138
Ligand excluded by PLIPMOH.24: 3 residues within 4Å:- Chain A: P.229, D.230
- Ligands: MOH.25
Ligand excluded by PLIPMOH.25: 4 residues within 4Å:- Chain A: S.221, R.227, P.229
- Ligands: MOH.24
Ligand excluded by PLIPMOH.26: 5 residues within 4Å:- Chain A: A.21, P.23, H.45, R.50
- Ligands: MOH.31
Ligand excluded by PLIPMOH.27: 2 residues within 4Å:- Chain A: P.49, N.51
Ligand excluded by PLIPMOH.28: 3 residues within 4Å:- Chain A: N.136, H.138, D.139
Ligand excluded by PLIPMOH.29: 3 residues within 4Å:- Chain A: Q.58, N.61
- Ligands: MOH.18
Ligand excluded by PLIPMOH.30: 1 residues within 4Å:- Chain A: R.28
Ligand excluded by PLIPMOH.31: 2 residues within 4Å:- Chain A: R.50
- Ligands: MOH.26
Ligand excluded by PLIPMOH.32: 2 residues within 4Å:- Chain A: D.175, T.179
Ligand excluded by PLIPMOH.33: 2 residues within 4Å:- Chain A: E.10, N.11
Ligand excluded by PLIPMOH.34: 5 residues within 4Å:- Chain A: D.105, P.106, P.107, P.108, A.110
Ligand excluded by PLIPMOH.35: 3 residues within 4Å:- Chain A: K.98, T.99, R.100
Ligand excluded by PLIPMOH.36: 2 residues within 4Å:- Chain A: I.89, T.90
Ligand excluded by PLIPMOH.37: 1 residues within 4Å:- Ligands: GOL.11
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. Acs Chem.Biol. (2018)
- Release Date
- 2018-12-12
- Peptides
- Aromatic peroxygenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.13 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 2 x 1NP: 1-NAPHTHOL(Non-covalent)
- 23 x MOH: METHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase. Acs Chem.Biol. (2018)
- Release Date
- 2018-12-12
- Peptides
- Aromatic peroxygenase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A