SMTL ID : 5shs.1 (3 other biounits)

CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 10 IN COMPLEX WITH c34c(n(Cc1cccc2c1cccc2)nn3)ncnc4N5CCCCC5, micromolar IC50=0.183

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.83, H.117, D.118, D.228 Ligands: MG.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.83, A:H.117, A:D.118, A:D.228, H2O.3, H2O.4

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.118 Ligands: ZN.1 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.1, H2O.1, H2O.2, H2O.3, H2O.4

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: P.35, F.36, E.37, N.38 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.38, A:N.38

1 x JIS: 3-[(naphthalen-1-yl)methyl]-7-(piperidin-1-yl)-3H-[1,2,3]triazolo[4,5-d]pyrimidine(Non-covalent)

JIS.4: 12 residues within 4Å: Chain A: Y.78, L.189, F.193, L.229, I.246, Y.247, F.250, M.267, G.279, Q.280, F.283, V.287 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.193, A:I.246, A:F.283, A:V.287 Hydrogen bonds: A:Q.280 pi-Stacking: A:F.250, A:F.283, A:F.283, A:F.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Flohr, A. et al., Crystal Structure of a human phosphodiesterase 10 complex. To be published

Release Date

2022-10-12

Peptides

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A

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