SMTL ID : 5sjr.2 (3 other biounits)

CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 10 IN COMPLEX WITH c4(c(c1ccc(cc1)c2ccccc2OCC)nc3ccc(cc3c4N[C@@H](C(O)=O)C)F)C#N, micromolar IC50=0.0015665

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x K63: N-[3-cyano-2-(2'-ethoxy[1,1'-biphenyl]-4-yl)-6-fluoroquinolin-4-yl]-D-alanine(Non-covalent)

K63.1: 14 residues within 4Å: Chain A: S.231, V.232, I.246, Y.247, F.250, P.266, M.267, K.272, E.275, V.276, G.279, Q.280, G.282, F.283 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.232, A:I.246, A:I.246, A:F.250, A:M.267, A:V.276, A:F.283, A:F.283, A:F.283 Hydrogen bonds: A:Y.247 pi-Stacking: A:F.283 Halogen bonds: A:E.275

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.83, H.117, D.118, D.228 Ligands: MG.3 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.83, A:H.117, A:D.118, A:D.228, H2O.1, H2O.2

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.118, H.149 Ligands: ZN.2 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.118, H2O.1, H2O.1, H2O.2, H2O.2, H2O.3

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: P.35, F.36, E.37, N.38 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.37, A:N.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Flohr, A. et al., Crystal Structure of a human phosphodiesterase 10 complex. To be published

Release Date

2022-10-12

Peptides

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A

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