SMTL ID : 5sy8.1

Crystal structure of the complex of 10E8 Fab light chain mutant1 and T117v2 HIV-1 MPER scaffold

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain B: L.27, R.28, S.29, H.30, Y.31, A.65, G.67 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.28, B:S.29 Water bridges: B:L.27, B:S.66, B:G.67 GOL.2: 7 residues within 4Å: Chain B: A.146, V.147, T.148, T.199, H.200, E.201, G.202 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.148, B:E.201, B:E.201, B:G.202 GOL.3: 5 residues within 4Å: Chain A: Y.105 Chain C: R.50, H.69, I.117, L.121 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:Y.105, C:R.50, C:R.50 Water bridges: A:Y.105, A:F.107 GOL.4: 5 residues within 4Å: Chain A: G.55 Chain C: Q.77, N.78, G.112, N.113 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.78, C:G.112, C:N.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irimia, A. et al., Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design. PLoS Pathog. (2017)

Release Date

2017-03-08

Peptides

10E8 FAB HEAVY CHAIN: A
10E8 FAB LIGHT CHAIN: B
10E8 EPITOPE SCAFFOLD T117v2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
O

10E8 FAB HEAVY CHAIN

10E8 FAB LIGHT CHAIN

10E8 EPITOPE SCAFFOLD T117v2

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