SMTL ID : 5t29.1

Crystal structure of 10E8 Fab light chain mutant3, against the MPER region of the HIV-1 Env, in complex with the MPER epitope scaffold T117v2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: S.109 Chain B: L.27, E.28, S.29, H.30, Y.31 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.27, B:S.29

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain B: Q.36, G.56, P.58, R.60, F.61, E.80, D.81 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.36, B:G.56, B:D.81 Water bridges: B:K.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irimia, A. et al., Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design. PLoS Pathog. (2017)

Release Date

2017-03-08

Peptides

Antibody 10E8 FAB HEAVY CHAIN: A
Antibody 10E8 FAB LIGHT CHAIN: B
10E8 EPITOPE SCAFFOLD T117V2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
O

Antibody 10E8 FAB HEAVY CHAIN

Antibody 10E8 FAB LIGHT CHAIN

10E8 EPITOPE SCAFFOLD T117V2

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