SMTL ID : 5t5b.2 (1 other biounit)

CRYSTAL STRUCTURE OF THE COMPLEX OF 10E8 FAB LIGHT CHAIN MUTANT5 AND T117V2 HIV-1 MPER SCAFFOLD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: V.2, Q.3, L.4, W.121, R.123 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.2, A:L.4 Water bridges: A:L.4, A:R.123 GOL.2: 4 residues within 4Å: Chain A: Y.104, Y.105 Chain C: R.50, H.69 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:R.50, C:H.69, A:Y.105, A:Y.105 GOL.3: 4 residues within 4Å: Chain A: W.58, R.74, L.75, N.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.76 Water bridges: A:R.74, A:S.77 GOL.4: 9 residues within 4Å: Chain A: G.42, K.43, G.44 Chain B: T.8, E.84, Y.86, G.102, G.103, K.105 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.42, B:G.102, B:K.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irimia, A. et al., Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design. PLoS Pathog. (2017)

Release Date

2017-03-08

Peptides

Antibody 10E8 FAB HEAVY CHAIN: A
Antibody 10E8 FAB LIGHT CHAIN MUTATED: B
10E8 EPITOPE SCAFFOLD T117V2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
O

Antibody 10E8 FAB HEAVY CHAIN

Antibody 10E8 FAB LIGHT CHAIN MUTATED

10E8 EPITOPE SCAFFOLD T117V2

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