SMTL ID : 5tfw.1

Crystal structure of 10E8 Fab light chain mutant2 against the MPER region of the HIV-1 Env, in complex with T117v2 epitope scaffold

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: Q.39, G.42, K.43 Chain B: E.84, Y.86, G.102 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.102

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: Q.39 Chain B: K.37, K.38, P.39, E.84, Y.86 Ligands: PEG.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.86, B:Y.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irimia, A. et al., Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design. PLoS Pathog. (2017)

Release Date

2017-03-08

Peptides

Antibody 10E8 FAB HEAVY CHAIN: A
Antibody 10E8 FAB LIGHT CHAIN MUTANT2: B
10E8 EPITOPE SCAFFOLD T117V2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
O

Antibody 10E8 FAB HEAVY CHAIN

Antibody 10E8 FAB LIGHT CHAIN MUTANT2

10E8 EPITOPE SCAFFOLD T117V2

Related Entries With Identical Sequence