SMTL ID : 5t85.1

Crystal structure of 10E8 Fab in complex with the MPER epitope scaffold T117v2 and phosphatidylglycerol (06:0 PG)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 44G: (2S)-3-{[(R)-{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate(Non-covalent)

44G.1: 8 residues within 4Å: Chain A: S.109 Chain B: L.27, R.28, S.29, H.30, Y.31, A.65, G.67 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.28, B:S.29, B:A.65

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 7 residues within 4Å: Chain B: Q.36, G.56, P.58, R.60, F.61, E.80, D.81 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.36, B:R.60, B:D.81 PGE.3: 8 residues within 4Å: Chain C: F.43, H.69, T.70, V.75, L.109, A.110, L.111, I.117 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irimia, A. et al., Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design. PLoS Pathog. (2017)

Release Date

2017-03-08

Peptides

Antibody 10E8 FAB HEAVY CHAIN: A
Antibody 10E8 FAB LIGHT CHAIN: B
10E8 EPITOPE SCAFFOLD T117V2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
G

Antibody 10E8 FAB HEAVY CHAIN

Antibody 10E8 FAB LIGHT CHAIN

10E8 EPITOPE SCAFFOLD T117V2

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