SMTL ID : 5t8w.1

Cytochrome c - calixarene free

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x HEC: HEME C(Covalent)

HEC.1: 26 residues within 4Å: Chain A: R.18, C.19, Q.21, C.22, H.23, V.33, G.34, P.35, L.37, I.40, S.45, G.46, Y.51, Y.53, T.54, N.57, W.64, M.69, Y.72, L.73, T.83, K.84, M.85, A.86, F.87, L.99 23 PLIP interactions: 23 interactions with chain A, Hydrophobic interactions: A:Q.21, A:V.33, A:L.37, A:L.37, A:I.40, A:Y.51, A:W.64, A:L.73, A:M.85, A:F.87, A:F.87, A:L.99 Hydrogen bonds: A:G.46, A:Q.47, A:Y.53, A:T.54, A:N.57, A:T.83, A:K.84 Water bridges: A:R.43, A:A.48 pi-Stacking: A:Y.72 Metal complexes: A:H.23 HEC.2: 26 residues within 4Å: Chain B: R.18, C.19, Q.21, C.22, H.23, V.33, G.34, P.35, L.37, I.40, S.45, G.46, Y.51, Y.53, T.54, N.57, W.64, M.69, Y.72, L.73, T.83, K.84, M.85, A.86, F.87, L.99 21 PLIP interactions: 21 interactions with chain B, Hydrophobic interactions: B:P.35, B:L.37, B:L.37, B:I.40, B:Y.51, B:W.64, B:L.73, B:M.85, B:F.87, B:L.99 Hydrogen bonds: B:G.46, B:T.54, B:N.57, B:T.83, B:T.83, B:K.84 Water bridges: B:Q.47, B:Q.47 Salt bridges: B:K.84 pi-Stacking: B:Y.72 Metal complexes: B:H.23

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain B: T.24, V.25, E.26 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: G.89, K.91, K.92 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Doolan, A.M. et al., Protein Recognition by Functionalized Sulfonatocalix[4]arenes. Chemistry (2018)

Release Date

2017-11-01

Peptides

Cyc1p: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyc1p

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