SMTL ID : 5tw5.1

Structure of mouse CD1d with bound glycosphingolipid JJ112

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.85 Å
Oligo State
hetero-1-1-mer
Ligands
1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x PLM: PALMITIC ACID(Non-covalent)
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x 7LM: N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxy-16-phenylhexadecan-2-yl]octanamide(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Guillaume, J. et al., Galactosylsphingamides: new alpha-GalCer analogues to probe the F'-pocket of CD1d. Sci Rep (2017)
Release Date
2017-09-20
Peptides
Antigen-presenting glycoprotein CD1d1: A
Beta-2-microglobulin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

Antigen-presenting glycoprotein CD1d1

Beta-2-microglobulin

Related Entries With Identical Sequence

1z5l.1 | 1z5l.2 | 1z5l.3 | 2akr.1 | 2akr.2 | 2akr.3 | 2akr.4 | 2gaz.1 | 2q7y.1 | 2q7y.2 | 3g08.1 | 3ma7.1 | 3ma7.2 | 3o8x.1 | 3o9w.1 | 3qux.1 | 3quy.1 | 3quz.1 | 3rzc.1 | 3t1f.1 | 3ta3.1 | 3tvm.1 | 3tvm.2 | 4elm.1 | 4elm.2 | 4irj.1 | 4irs.1 | 4y16.1 | 4y2d.1 | 4y2d.2  more...