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SMTL ID : 5tw2.1

Structure of mouse CD1d with bound alpha-galactosylsphingamide JG168

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.75 Å
Oligo State
hetero-1-1-mer
Ligands
1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x 7LP: (5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(6-phenylhexyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide(Non-covalent)
1 x PLM: PALMITIC ACID(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Guillaume, J. et al., Galactosylsphingamides: new alpha-GalCer analogues to probe the F'-pocket of CD1d. Sci Rep (2017)
Release Date
2017-09-20
Peptides
Antigen-presenting glycoprotein CD1d1: A
Beta-2-microglobulin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B