SMTL ID : 1z5l.2 (2 other biounits)

Structure of a highly potent short-chain galactosyl ceramide agonist bound to CD1D

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.20 Å
Oligo State
hetero-1-1-mer
Ligands
1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x PBS: (2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL(Non-covalent)
1 x R16: HEXADECANE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Zajonc, D.M. et al., Structure and function of a potent agonist for the semi-invariant natural killer T cell receptor. Nat.Immunol. (2005)
Release Date
2005-07-19
Peptides
T-cell surface glycoprotein CD1d antigen: A
Beta-2-microglobulin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D

T-cell surface glycoprotein CD1d antigen

Beta-2-microglobulin

Related Entries With Identical Sequence

1p4l.1 | 1u58.1 | 1z5l.1 | 1z5l.3 | 2akr.1 | 2akr.2 | 2akr.3 | 2akr.4 | 2fik.1 | 2gaz.1 | 2q7y.1 | 2q7y.2 | 3arb.1 | 3ard.1 | 3are.1 | 3arf.1 | 3arg.1 | 3au1.1 | 3c8k.1 | 3g08.1 | 3gml.1 | 3gmm.1 | 3gmn.1 | 3gmo.1 | 3gmp.1 | 3gmq.1 | 3gmr.1 | 3he6.1 | 3he7.1 | 3ilp.1  more...