SMTL ID : 6cwb.1

Structure of alpha-GSA[8,4P] bound by CD1d and in complex with the Va14Vb8.2 TCR

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.85 Å
Oligo State
hetero-1-1-1-1-mer
Ligands
1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x PLM: PALMITIC ACID(Non-covalent)
1 x FJJ: (5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-[(1E)-4-phenylbutylidene]-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide (non-preferred name)(Non-covalent)
1 x NA: SODIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Wang, J. et al., A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides. J.Biol.Chem. (2019)
Release Date
2019-04-03
Peptides
Antigen-presenting glycoprotein CD1d1: A
Beta-2-microglobulin: B
Chimeric T cell antigen receptor alpha chain Va14,Va24,Ja18: C
Chimeric T cell antigen receptor beta chain Vb8.2, vb11: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D

Antigen-presenting glycoprotein CD1d1

Beta-2-microglobulin

Chimeric T cell antigen receptor alpha chain Va14,Va24,Ja18

Chimeric T cell antigen receptor beta chain Vb8.2, vb11

Related Entries With Identical Sequence

1p4l.1 | 1u58.1 | 1z5l.1 | 1z5l.2 | 1z5l.3 | 2akr.1 | 2akr.2 | 2akr.3 | 2akr.4 | 2fik.1 | 2gaz.1 | 2q7y.1 | 2q7y.2 | 3arb.1 | 3ard.1 | 3are.1 | 3arf.1 | 3arg.1 | 3au1.1 | 3c8k.1 | 3g08.1 | 3gml.1 | 3gmm.1 | 3gmn.1 | 3gmo.1 | 3gmp.1 | 3gmq.1 | 3gmr.1 | 3he6.1 | 3he7.1  more...