- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.54 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.1: 18 residues within 4Å:- Chain A: Y.41, F.42, H.44, F.45, H.57, K.60, V.61, A.64, L.65, L.82, L.85, H.86, L.90, V.92, N.96, F.97, L.100, L.135
20 PLIP interactions:19 interactions with chain A, 1 Ligand-Water interactions,- Hydrophobic interactions: A:Y.41, A:F.42, A:K.60, A:V.61, A:V.61, A:A.64, A:L.65, A:L.82, A:L.85, A:L.90, A:V.92, A:F.97, A:L.135
- Water bridges: A:K.60, A:K.60
- Salt bridges: A:H.44, A:K.60
- pi-Stacking: A:H.57
- Metal complexes: A:H.86, H2O.1
HEM.2: 18 residues within 4Å:- Chain B: Y.41, F.42, F.45, H.57, K.60, V.61, A.64, L.65, L.82, L.85, H.86, L.90, V.92, N.96, F.97, L.100, V.131, L.135
22 PLIP interactions:21 interactions with chain B, 1 Ligand-Water interactions- Hydrophobic interactions: B:Y.41, B:Y.41, B:F.42, B:F.42, B:F.45, B:V.61, B:V.61, B:L.65, B:L.82, B:L.90, B:V.92, B:N.96, B:F.97, B:F.97, B:L.100, B:V.131, B:L.135
- Salt bridges: B:K.60
- pi-Stacking: B:H.57
- pi-Cation interactions: B:H.86
- Metal complexes: B:H.86, H2O.11
HEM.3: 19 residues within 4Å:- Chain C: T.38, F.41, F.42, F.45, H.63, K.66, V.67, A.70, F.71, F.85, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141
23 PLIP interactions:22 interactions with chain C, 1 Ligand-Water interactions- Hydrophobic interactions: C:T.38, C:F.41, C:F.41, C:F.42, C:F.42, C:F.42, C:V.67, C:V.67, C:F.71, C:F.71, C:F.85, C:L.88, C:L.96, C:V.98, C:N.102, C:F.103, C:L.106, C:L.141
- Water bridges: C:S.44
- Salt bridges: C:H.63
- pi-Stacking: C:H.63
- Metal complexes: C:H.92, H2O.18
HEM.4: 17 residues within 4Å:- Chain D: T.38, F.41, F.42, H.63, K.66, V.67, A.70, F.71, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141
20 PLIP interactions:19 interactions with chain D, 1 Ligand-Water interactions- Hydrophobic interactions: D:T.38, D:F.41, D:F.41, D:F.42, D:F.42, D:F.42, D:V.67, D:F.71, D:L.88, D:L.91, D:L.96, D:V.98, D:N.102, D:F.103, D:L.106, D:L.141
- Water bridges: D:H.63
- pi-Cation interactions: D:H.92
- Metal complexes: D:H.92, H2O.26
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Terrell, J.R. et al., Hemoglobin crystals immersed in liquid oxygen reveal diffusion channels. Biochem. Biophys. Res. Commun. (2018)
- Release Date
- 2018-01-10
- Peptides
- Hemoglobin subunit alpha: AB
Hemoglobin subunit beta: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
SMTL ID : 5wog.1
Human Hemoglobin immersed in Liquid Oxygen for 1 minute
Hemoglobin subunit alpha
Toggle Identical (AB)Hemoglobin subunit beta
Toggle Identical (CD)Related Entries With Identical Sequence
1a3n.1 | 1a3o.1 | 1aj9.1 | 1b86.1 | 1bab.1 | 1bbb.1 | 1bij.1 | 1buw.1 | 1bz0.1 | 1bz1.1 | 1bzz.1 | 1cbl.1 | 1cbm.1 | 1cls.1 | 1coh.1 | 1dke.1 | 1fn3.1 | 1g9v.1 | 1gzx.1 | 1hab.1 | 1hac.1 | 1hbb.1 | 1hco.1 | 1hga.1 | 1hgb.1 | 1hgc.1 | 1hho.1 | 1ird.1 | 1j3y.1 | 1j3y.2 more...less...1j3z.1 | 1j3z.2 | 1j40.1 | 1j40.2 | 1j41.1 | 1j41.2 | 1jy7.1 | 1jy7.2 | 1jy7.3 | 1k0y.1 | 1kd2.1 | 1lfl.1 | 1lfl.2 | 1lfq.1 | 1lft.1 | 1lfv.1 | 1lfy.1 | 1lfz.1 | 1ljw.1 | 1mko.1 | 1nih.1 | 1qsh.1 | 1qsi.1 | 1qxd.1 | 1qxd.2 | 1qxe.1 | 1qxe.2 | 1qxe.3 | 1r1x.1 | 1r1y.1 | 1rps.1 | 1rq3.1 | 1rq4.1 | 1rvw.1 | 1sdk.1 | 1sdk.2 | 1sdl.1 | 1sdl.2 | 1thb.1 | 1uiw.1 | 1uiw.2 | 1vwt.1 | 1xxt.1 | 1xy0.1 | 1xye.1 | 1xz2.1 | 1xz4.1 | 1xz5.1 | 1xz7.1 | 1xzu.1 | 1xzv.1 | 1y09.1 | 1y0a.1 | 1y0c.1 | 1y0d.1 | 1y8w.1 | 1ydz.1 | 1yh9.1 | 1yhe.1 | 1yhr.1 | 1yzi.1 | 2d5z.1 | 2d60.1 | 2dn1.1 | 2dn2.1 | 2dn3.1 | 2dxm.1 | 2h35.1 | 2hbc.1 | 2hbd.1 | 2hbe.1 | 2hbf.1 | 2hco.1 | 2hhb.1 | 2hhd.1 | 2m6z.1 | 2w6v.1 | 3b75.1 | 3b75.2 | 3b75.3 | 3d17.1 | 3d7o.1 | 3hhb.1 | 3hxn.1 | 3ic0.1 | 3ic2.1 | 3kmf.1 | 3nmm.1 | 3odq.1 | 3onz.1 | 3oo4.1 | 3oo5.1 | 3p5q.1 | 3qjb.1 | 3qjd.1 | 3r5i.1 | 3szk.1 | 3szk.2 | 3wcp.1 | 3whm.1 | 4fc3.1 | 4hhb.1 | 4ij2.1 | 4l7y.1 | 4m4a.1 | 4m4b.1 | 4mqc.1 | 4mqh.1 | 4n7n.1 | 4n7n.2 | 4n7n.3 | 4n7o.1 | 4n7o.2 | 4n7o.3 | 4n7p.1 | 4n7p.2 | 4n7p.3 | 4n8t.1 | 4ni0.1 | 4ni1.1 | 4rol.1 | 4rom.1 | 4wjg.1 | 4wjg.2 | 4wjg.3 | 4x0l.1 | 4xs0.1 | 5ee4.1 | 5ee4.2 | 5hy8.1 | 5hy8.2 | 5hy8.3 | 5kdq.1 | 5ksi.1 | 5ksj.1 | 5ni1.1 | 5ucu.1 | 5urc.1 | 5vmm.1 | 5woh.1 | 5x2r.1 | 5x2r.2 | 5x2r.3 | 5x2s.1 | 5x2s.2 | 5x2s.3 | 5x2t.1 | 5x2t.2 | 5x2t.3 | 5x2u.1 | 5x2u.2 | 5x2u.3 | 6bnr.1 | 6bwp.1 | 6bwu.1 | 6di4.1 | 6fqf.1 | 6hk2.1 | 6ka9.1 | 6ka9.2 | 6kae.1 | 6kae.2 | 6kah.1 | 6kah.2 | 6kai.1 | 6kai.2 | 6kas.1 | 6kat.1 | 6kau.1 | 6kav.1 | 6l5x.1 | 6l5y.1 | 6lcw.1 | 6lcw.2 | 6lcx.1 | 6lcx.2 | 6nq5.1 | 6tb2.1 | 6xd9.1 | 6xdt.1 | 6xe7.1 | 7dy3.1 | 7dy3.2 | 7dy4.1 | 7dy4.2 | 7jjq.1 | 7jxz.1 | 7jy0.1 | 7jy1.1 | 7jy3.1 | 7pcf.1 | 7pch.1 | 7pcq.1 | 8dov.1 | 8dov.2 | 8fdk.1 | 8fdl.1 | 8fdm.1 | 8fdn.1