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SMTL ID : 3szk.1 (1 other biounit)

Crystal Structure of Human metHaemoglobin Complexed with the First NEAT Domain of IsdH from Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1:

16 residues within 4Å:

Chain A: Y.42, F.43, F.46, H.58, K.61, V.62, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136

18 PLIP interactions:

18 interactions with chain A,

Hydrophobic interactions: A:Y.42, A:F.43, A:F.43, A:F.46, A:V.62, A:L.83, A:L.83, A:L.86, A:L.91, A:V.93, A:F.98, A:F.98, A:L.101, A:L.136
pi-Stacking: A:H.58, A:H.87, A:H.87
Metal complexes: A:H.87

HEM.2:

18 residues within 4Å:

Chain B: T.38, F.41, F.42, S.44, F.45, H.63, V.67, A.70, F.71, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141

21 PLIP interactions:

21 interactions with chain B,

Hydrophobic interactions: B:T.38, B:F.41, B:F.41, B:F.42, B:F.42, B:V.67, B:A.70, B:F.71, B:L.88, B:L.91, B:L.96, B:V.98, B:N.102, B:L.106, B:L.141
Hydrogen bonds: B:S.44
Salt bridges: B:K.66
pi-Stacking: B:H.63, B:H.92, B:H.92
Metal complexes: B:H.92

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Krishna Kumar, K. et al., Structural basis for hemoglobin capture by Staphylococcus aureus cell-surface protein, IsdH. J.Biol.Chem. (2011)

Release Date

2011-09-14

Peptides

Hemoglobin subunit alpha: A
Hemoglobin subunit beta: B
Iron-regulated surface determinant protein H: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Hemoglobin subunit alpha

Hemoglobin subunit beta

Iron-regulated surface determinant protein H

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