- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.48 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.2: 5 residues within 4Å:- Chain A: L.29, F.43, H.58, V.62
- Ligands: HEM.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.58
OXY.6: 4 residues within 4Å:- Chain B: F.42, H.63, V.67
- Ligands: HEM.5
No protein-ligand interaction detected (PLIP)OXY.10: 4 residues within 4Å:- Chain C: F.43, H.58, V.62
- Ligands: HEM.9
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.58
OXY.14: 4 residues within 4Å:- Chain D: F.42, H.63, V.67
- Ligands: HEM.13
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:H.63
- 5 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)
O4B.3: 5 residues within 4Å:- Chain A: F.33, L.34, P.37, K.40, L.48
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.40
O4B.7: 3 residues within 4Å:- Chain B: P.58, K.59, A.62
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.59
O4B.11: 4 residues within 4Å:- Chain C: L.34, P.37, K.40, L.48
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.40
O4B.12: 6 residues within 4Å:- Chain C: K.7, K.11, V.70, A.71, V.73, D.74
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.11
O4B.15: 3 residues within 4Å:- Chain D: P.58, K.59, A.62
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.59
- 2 x VUD: 6-{(1S)-1-[(2-amino-6-fluoroquinolin-3-yl)oxy]ethyl}-5-(1H-pyrazol-1-yl)pyridin-2(1H)-one(Non-covalent)
VUD.4: 10 residues within 4Å:- Chain A: V.1, L.2, V.73, D.74, S.131
- Chain C: D.74, P.77, T.134, V.135
- Ligands: VUD.8
9 PLIP interactions:5 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: C:P.77, C:V.135, A:V.1, A:V.1, A:L.2
- Hydrogen bonds: C:D.74, A:L.2
- Water bridges: C:M.76, C:N.78
VUD.8: 9 residues within 4Å:- Chain A: D.74, P.77, T.134, V.135
- Chain C: V.1, L.2, V.73, D.74
- Ligands: VUD.4
10 PLIP interactions:5 interactions with chain C, 5 interactions with chain A- Hydrophobic interactions: C:V.1, C:V.1, C:L.2, A:P.77, A:V.135
- Hydrogen bonds: C:L.2, A:D.74
- Water bridges: C:K.7, A:M.76, A:N.78
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gopalsamy, A. et al., PF-07059013: A Noncovalent Modulator of Hemoglobin for Treatment of Sickle Cell Disease. J.Med.Chem. (2021)
- Release Date
- 2021-01-13
- Peptides
- Hemoglobin subunit alpha: AC
Hemoglobin subunit beta: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D
SMTL ID : 7jy3.1
Structure of HbA with compound 23 (PF-07059013)
Hemoglobin subunit alpha
Toggle Identical (AC)Hemoglobin subunit beta
Toggle Identical (BD)Related Entries With Identical Sequence
1a00.1 | 1a01.1 | 1a0u.1 | 1a0z.1 | 1a3n.1 | 1a3o.1 | 1a9w.1 | 1aj9.1 | 1b86.1 | 1bab.1 | 1bbb.1 | 1bij.1 | 1buw.1 | 1bz0.1 | 1bz1.1 | 1bzz.1 | 1cbl.1 | 1cbm.1 | 1cls.1 | 1cmy.1 | 1coh.1 | 1dke.1 | 1dxt.1 | 1dxu.1 | 1dxv.1 | 1fdh.1 | 1fn3.1 | 1g9v.1 | 1gbu.1 | 1gbv.1 more...less...1gzx.1 | 1hab.1 | 1hac.1 | 1hba.1 | 1hbb.1 | 1hbs.1 | 1hbs.2 | 1hco.1 | 1hdb.1 | 1hga.1 | 1hgb.1 | 1hgc.1 | 1hho.1 | 1ird.1 | 1j3y.1 | 1j3y.2 | 1j3z.1 | 1j3z.2 | 1j40.1 | 1j40.2 | 1j41.1 | 1j41.2 | 1jy7.1 | 1jy7.2 | 1jy7.3 | 1k0y.1 | 1k1k.1 | 1kd2.1 | 1lfl.1 | 1lfl.2 | 1lfq.1 | 1lft.1 | 1lfv.1 | 1lfy.1 | 1lfz.1 | 1ljw.1 | 1m9p.1 | 1mko.1 | 1nej.1 | 1nih.1 | 1nqp.1 | 1qsh.1 | 1qsi.1 | 1qxd.1 | 1qxd.2 | 1qxe.1 | 1qxe.2 | 1qxe.3 | 1r1x.1 | 1r1y.1 | 1rps.1 | 1rq3.1 | 1rq4.1 | 1rqa.1 | 1rvw.1 | 1sdk.1 | 1sdk.2 | 1sdl.1 | 1sdl.2 | 1shr.1 | 1si4.1 | 1thb.1 | 1uiw.1 | 1uiw.2 | 1vwt.1 | 1xxt.1 | 1xy0.1 | 1xye.1 | 1xz2.1 | 1xz4.1 | 1xz5.1 | 1xz7.1 | 1xzu.1 | 1xzv.1 | 1y09.1 | 1y0a.1 | 1y0c.1 | 1y0d.1 | 1y0t.1 | 1y0w.1 | 1y22.1 | 1y2z.1 | 1y31.1 | 1y35.1 | 1y45.1 | 1y46.1 | 1y4b.1 | 1y4f.1 | 1y4g.1 | 1y4p.1 | 1y4q.1 | 1y4r.1 | 1y4v.1 | 1y5f.1 | 1y5j.1 | 1y5k.1 | 1y7c.1 | 1y7d.1 | 1y7g.1 | 1y7z.1 | 1y83.1 | 1y85.1 | 1y8w.1 | 1ydz.1 | 1ye0.1 | 1ye1.1 | 1ye2.1 | 1yen.1 | 1yeo.1 | 1yeq.1 | 1yeu.1 | 1yev.1 | 1yff.1 | 1yff.2 | 1yg5.1 | 1ygd.1 | 1ygf.1 | 1yh9.1 | 1yhe.1 | 1yhr.1 | 1yie.1 | 1yih.1 | 1yvq.1 | 1yvt.1 | 1yzi.1 | 2d5z.1 | 2d60.1 | 2dn1.1 | 2dn2.1 | 2dn3.1 | 2dxm.1 | 2h35.1 | 2hbc.1 | 2hbd.1 | 2hbe.1 | 2hbf.1 | 2hbs.1 | 2hbs.2 | 2hco.1 | 2hhb.1 | 2hhd.1 | 2hhe.1 | 2m6z.1 | 2w6v.1 | 2yrs.1 | 2yrs.2 | 3b75.1 | 3b75.2 | 3b75.3 | 3d17.1 | 3d7o.1 | 3dut.1 | 3hhb.1 | 3hxn.1 | 3ic0.1 | 3ic2.1 | 3kmf.1 | 3nl7.1 | 3nmm.1 | 3odq.1 | 3onz.1 | 3oo4.1 | 3oo5.1 | 3ovu.1 | 3p5q.1 | 3qjb.1 | 3qjc.1 | 3qjd.1 | 3qje.1 | 3r5i.1 | 3s48.1 | 3s48.2 | 3s65.1 | 3s66.1 | 3szk.1 | 3szk.2 | 3wcp.1 | 3whm.1 | 4fc3.1 | 4hhb.1 | 4ij2.1 | 4l7y.1 | 4m4a.1 | 4m4b.1 | 4mqc.1 | 4mqg.1 | 4mqh.1 | 4mqj.1 | 4mqj.2 | 4mqk.1 | 4mqk.2 | 4n7n.1 | 4n7n.2 | 4n7n.3 | 4n7o.1 | 4n7o.2 | 4n7o.3 | 4n7p.1 | 4n7p.2 | 4n7p.3 | 4n8t.1 | 4ni0.1 | 4ni1.1 | 4rol.1 | 4rom.1 | 4wjg.1 | 4wjg.2 | 4wjg.3 | 4x0l.1 | 4xs0.1 | 5e29.1 | 5e6e.1 | 5e83.1 | 5ee4.1 | 5ee4.2 | 5hu6.1 | 5hy8.1 | 5hy8.2 | 5hy8.3 | 5jdo.1 | 5kdq.1 | 5ksi.1 | 5ksj.1 | 5ni1.1 | 5u3i.1 | 5ucu.1 | 5ufj.1 | 5urc.1 | 5vmm.1 | 5wog.1 | 5woh.1 | 5x2r.1 | 5x2r.2 | 5x2r.3 | 5x2s.1 | 5x2s.2 | 5x2s.3 | 5x2t.1 | 5x2t.2 | 5x2t.3 | 5x2u.1 | 5x2u.2 | 5x2u.3 | 6bnr.1 | 6bwp.1 | 6bwu.1 | 6di4.1 | 6fqf.1 | 6hbw.1 | 6hk2.1 | 6ka9.1 | 6ka9.2 | 6kae.1 | 6kae.2 | 6kah.1 | 6kah.2 | 6kai.1 | 6kai.2 | 6kao.1 | 6kap.1 | 6kaq.1 | 6kar.1 | 6kas.1 | 6kat.1 | 6kau.1 | 6kav.1 | 6l5v.1 | 6l5w.1 | 6l5x.1 | 6l5y.1 | 6lcw.1 | 6lcw.2 | 6lcx.1 | 6lcx.2 | 6nq5.1 | 6tb2.1 | 6xd9.1 | 6xdt.1 | 6xe7.1 | 7dy3.1 | 7dy3.2 | 7dy4.1 | 7dy4.2 | 7jjq.1 | 7jxz.1 | 7jy0.1 | 7jy1.1 | 7pcf.1 | 7pch.1 | 7pcq.1 | 7uvb.1 | 8dov.1 | 8dov.2 | 8fdk.1 | 8fdl.1 | 8fdm.1 | 8fdn.1 | 9av9.1 | 9ayz.1 | 9ayz.2