- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.07 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.5: 23 residues within 4Å:- Chain A: A.50, H.86, G.134, P.135, L.136, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Chain B: D.399, L.400, V.433, E.435, F.462, Y.465, H.498
- Ligands: E4P.6, CA.7
18 PLIP interactions:12 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:G.134, A:L.136, A:D.175, A:D.175, A:G.176, A:E.180
- Water bridges: A:N.84, A:C.177, A:D.203, B:E.435
- Salt bridges: A:H.86, A:H.86, A:H.281
- Hydrophobic interactions: B:D.399, B:V.433, B:F.462, B:Y.465
- pi-Stacking: B:F.462
TPP.12: 23 residues within 4Å:- Chain A: D.399, L.400, V.433, E.435, F.462, Y.465, H.498
- Chain B: A.50, H.86, G.134, P.135, L.136, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Ligands: E4P.13, CA.14
17 PLIP interactions:11 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:G.134, B:L.136, B:D.175, B:G.176, B:N.205
- Water bridges: B:N.84, B:C.177, B:D.203, A:T.458
- Salt bridges: B:H.86, B:H.86, B:H.281
- Hydrophobic interactions: A:D.399, A:V.433, A:F.462, A:Y.465
- pi-Stacking: A:F.462
- 2 x E4P: ERYTHOSE-4-PHOSPHATE(Covalent)
E4P.6: 10 residues within 4Å:- Chain A: H.47, H.86, H.281, G.282
- Chain B: S.403, F.459, H.486, D.494, R.545
- Ligands: TPP.5
10 PLIP interactions:1 interactions with chain A, 9 interactions with chain B- Hydrogen bonds: A:G.282, B:S.403
- Water bridges: B:R.376, B:R.376, B:S.403, B:L.491, B:D.494, B:R.545
- Salt bridges: B:H.486, B:R.545
E4P.13: 10 residues within 4Å:- Chain A: S.403, F.459, H.486, D.494, R.545
- Chain B: H.47, H.86, H.281, G.282
- Ligands: TPP.12
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:S.403, B:G.282
- Water bridges: A:R.376, A:R.376, A:S.403, A:H.486, A:L.491, A:R.545
- Salt bridges: A:H.486, A:R.545
- 2 x CA: CALCIUM ION(Non-covalent)
CA.7: 4 residues within 4Å:- Chain A: D.175, N.205, I.207
- Ligands: TPP.5
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.175, A:I.207, H2O.3
CA.14: 4 residues within 4Å:- Chain B: D.175, N.205, I.207
- Ligands: TPP.12
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.175, B:I.207, H2O.40
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, N.S. et al., Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions. Chembiochem (2018)
- Release Date
- 2018-06-06
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.07 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x E4P: ERYTHOSE-4-PHOSPHATE(Covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, N.S. et al., Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions. Chembiochem (2018)
- Release Date
- 2018-06-06
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A