- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 14 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 5 residues within 4Å:- Chain A: T.218, D.220
- Chain B: K.226, S.227, G.229
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.227
- Water bridges: B:Q.194, A:D.220
PEG.3: 6 residues within 4Å:- Chain A: K.73, N.123, T.124, D.125, V.126, P.127
No protein-ligand interaction detected (PLIP)PEG.4: 4 residues within 4Å:- Chain A: Q.546, A.659, P.660, F.663
2 PLIP interactions:2 interactions with chain A- Water bridges: A:Q.546, A:N.547
PEG.5: 4 residues within 4Å:- Chain A: K.226, H.231, I.232, E.234
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.226, A:H.231, A:I.232
PEG.6: 5 residues within 4Å:- Chain A: N.68, Q.323, Q.326, Q.327, N.330
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.68, A:Q.323, A:Q.326, A:N.330, A:N.330
PEG.7: 2 residues within 4Å:- Chain A: N.330, L.351
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.351
PEG.8: 4 residues within 4Å:- Chain A: A.154, A.155, N.158, K.159
4 PLIP interactions:4 interactions with chain A- Water bridges: A:A.155, A:N.158, A:N.158, A:K.159
PEG.11: 5 residues within 4Å:- Chain A: K.226, S.227, G.229
- Chain B: T.218, D.220
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Water bridges: B:T.218, B:T.218
- Hydrogen bonds: A:S.227
PEG.12: 6 residues within 4Å:- Chain B: K.73, N.123, T.124, D.125, V.126, P.127
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.101
PEG.13: 4 residues within 4Å:- Chain B: Q.546, A.659, P.660, F.663
2 PLIP interactions:2 interactions with chain B- Water bridges: B:Q.546, B:N.547
PEG.14: 4 residues within 4Å:- Chain B: K.226, H.231, I.232, E.234
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.226, B:I.232
- Water bridges: B:H.231
PEG.15: 5 residues within 4Å:- Chain B: N.68, Q.323, Q.326, Q.327, N.330
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.68, B:D.71, B:Q.323, B:Q.326, B:N.330, B:N.330
PEG.16: 2 residues within 4Å:- Chain B: N.330, L.351
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.351
PEG.17: 4 residues within 4Å:- Chain B: A.154, A.155, N.158, K.159
4 PLIP interactions:4 interactions with chain B- Water bridges: B:A.155, B:N.158, B:N.158, B:K.159
- 2 x 8FL: 2-[(2R)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-oxidanyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate(Non-covalent)
8FL.9: 23 residues within 4Å:- Chain A: A.50, H.86, G.134, P.135, L.136, G.174, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Chain B: D.399, V.433, E.435, F.459, F.462, Y.465, H.498
- Ligands: CA.1
22 PLIP interactions:17 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:I.209, A:I.209, B:D.399, B:F.462, B:Y.465
- Hydrogen bonds: A:G.134, A:G.134, A:L.136, A:D.175, A:D.175, A:G.176, A:E.180, A:N.205, A:N.205
- Water bridges: A:N.84, A:N.84, A:C.177, B:E.435
- Salt bridges: A:H.86, A:H.86, A:H.281
- pi-Stacking: B:F.462
8FL.18: 23 residues within 4Å:- Chain A: D.399, V.433, E.435, F.459, F.462, Y.465, H.498
- Chain B: A.50, H.86, G.134, P.135, L.136, G.174, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Ligands: CA.10
21 PLIP interactions:16 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:I.209, B:I.209, A:D.399, A:F.462, A:Y.465
- Hydrogen bonds: B:G.134, B:G.134, B:L.136, B:D.175, B:G.176, B:N.205, B:N.205
- Water bridges: B:N.84, B:N.84, B:H.86, B:C.177, A:T.458
- Salt bridges: B:H.86, B:H.86, B:H.281
- pi-Stacking: A:F.462
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, N.S. et al., The Mesomeric Effect of Thiazolium on non-Kekule Diradicals in Pichia stipitis Transketolase. Angew. Chem. Int. Ed. Engl. (2018)
- Release Date
- 2018-04-25
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 14 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x 8FL: 2-[(2R)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-oxidanyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, N.S. et al., The Mesomeric Effect of Thiazolium on non-Kekule Diradicals in Pichia stipitis Transketolase. Angew. Chem. Int. Ed. Engl. (2018)
- Release Date
- 2018-04-25
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A