- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.17 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 14 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.2: 5 residues within 4Å:- Chain A: A.154, A.155, N.158, K.159, P.160
4 PLIP interactions:4 interactions with chain A- Water bridges: A:A.155, A:N.158, A:N.158, A:K.159
PEG.3: 4 residues within 4Å:- Chain A: K.226, H.231, I.232, E.234
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.226, A:H.231, A:I.232
PEG.4: 4 residues within 4Å:- Chain A: Q.546, A.659, P.660, F.663
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Q.546
PEG.5: 5 residues within 4Å:- Chain A: N.330, F.333, Q.348, L.351, D.352
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.348, A:D.352
PEG.6: 5 residues within 4Å:- Chain A: K.226, S.227, G.229
- Chain B: T.218, D.220
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Water bridges: B:D.220, A:Q.194
- Hydrogen bonds: A:K.226
PEG.7: 2 residues within 4Å:- Chain A: L.665, F.666
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.652
PEG.8: 5 residues within 4Å:- Chain A: N.68, Q.323, Q.326, Q.327, N.330
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.68, A:N.330
- Water bridges: A:Q.326, A:Q.326
PEG.12: 5 residues within 4Å:- Chain B: A.154, A.155, N.158, K.159, P.160
4 PLIP interactions:4 interactions with chain B- Water bridges: B:A.155, B:N.158, B:N.158, B:K.159
PEG.13: 4 residues within 4Å:- Chain B: K.226, H.231, I.232, E.234
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.226, B:H.231, B:I.232
PEG.14: 4 residues within 4Å:- Chain B: Q.546, A.659, P.660, F.663
1 PLIP interactions:1 interactions with chain B- Water bridges: B:Q.546
PEG.15: 5 residues within 4Å:- Chain B: N.330, F.333, Q.348, L.351, D.352
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.348, B:D.352, B:D.352
PEG.16: 5 residues within 4Å:- Chain A: T.218, D.220
- Chain B: K.226, S.227, G.229
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:K.226
- Water bridges: A:T.218, A:T.218
PEG.17: 2 residues within 4Å:- Chain B: L.665, F.666
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.652
PEG.18: 5 residues within 4Å:- Chain B: N.68, Q.323, Q.326, Q.327, N.330
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.68, B:Q.326, B:N.330
- 2 x 8N9: 2-[(2E)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-2-[1,2-bis(oxidanyl)ethylidene]-4-methyl-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate(Non-covalent)
8N9.9: 27 residues within 4Å:- Chain A: H.47, A.50, H.86, H.120, G.134, P.135, L.136, G.174, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Chain B: D.399, L.400, V.433, E.435, F.459, F.462, Y.465, H.498
- Ligands: CA.1, E4P.10
20 PLIP interactions:5 interactions with chain B, 15 interactions with chain A- Hydrophobic interactions: B:D.399, B:F.462, B:Y.465, A:I.209, A:I.209
- Hydrogen bonds: B:H.498, A:H.120, A:G.134, A:L.136, A:D.175, A:G.176, A:N.205
- pi-Stacking: B:F.462
- Water bridges: A:N.84, A:N.84, A:H.86, A:C.177
- Salt bridges: A:H.86, A:H.86, A:H.281
8N9.19: 27 residues within 4Å:- Chain A: D.399, L.400, V.433, E.435, F.459, F.462, Y.465, H.498
- Chain B: H.47, A.50, H.86, H.120, G.134, P.135, L.136, G.174, D.175, G.176, E.180, N.205, I.207, S.208, I.209, I.268, H.281
- Ligands: CA.11, E4P.20
24 PLIP interactions:18 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:I.209, B:I.209, A:D.399, A:F.462, A:Y.465
- Hydrogen bonds: B:H.120, B:G.134, B:L.136, B:D.175, B:D.175, B:G.176, B:E.180, B:N.205, B:I.207, A:H.498
- Water bridges: B:N.84, B:N.84, B:H.86, B:C.177, A:E.435
- Salt bridges: B:H.86, B:H.86, B:H.281
- pi-Stacking: A:F.462
- 2 x E4P: ERYTHOSE-4-PHOSPHATE(Non-covalent)
E4P.10: 11 residues within 4Å:- Chain A: H.47, I.209, H.281
- Chain B: R.376, L.400, S.403, F.459, H.486, D.494, R.545
- Ligands: 8N9.9
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.403
- Water bridges: B:R.545, B:R.545
- Salt bridges: B:R.376, B:H.486, B:R.545
E4P.20: 11 residues within 4Å:- Chain A: R.376, L.400, S.403, F.459, H.486, D.494, R.545
- Chain B: H.47, I.209, H.281
- Ligands: 8N9.19
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.403
- Water bridges: A:R.545, A:R.545
- Salt bridges: A:R.376, A:H.486, A:R.545
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, N.S. et al., Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions. Chembiochem (2018)
- Release Date
- 2018-06-27
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.17 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 14 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x 8N9: 2-[(2E)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-2-[1,2-bis(oxidanyl)ethylidene]-4-methyl-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate(Non-covalent)
- 2 x E4P: ERYTHOSE-4-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, N.S. et al., Evidence of Diradicals Involved in the Yeast Transketolase Catalyzed Keto-Transferring Reactions. Chembiochem (2018)
- Release Date
- 2018-06-27
- Peptides
- Transketolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A