SMTL ID : 5zcw.1 (1 other biounit)

Structure of the Methanosarcina mazei class II CPD-photolyase in complex with intact, phosphodiester linked, CPD-lesion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.83, I.84, R.85, R.233, A.234, F.243, R.423 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:I.84, A:R.85, A:A.234 Water bridges: A:R.233, A:F.243, A:R.423, A:R.423 Salt bridges: A:R.85, A:R.423

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 28 residues within 4Å: Chain A: Y.270, L.282, S.283, N.284, L.285, S.286, L.289, F.316, E.319, I.320, W.323, K.324, S.327, K.390, G.393, R.396, M.397, A.400, N.421, D.427, G.428, D.430, N.432, G.433, G.436, I.437, S.440 Chain B: T.7 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:R.396, A:A.400 Hydrogen bonds: A:Y.270, A:Y.270, A:S.283, A:N.284, A:L.285, A:S.286, A:S.286, A:S.286, A:S.327, A:R.396, A:N.421, A:D.427, A:N.432 Water bridges: A:K.390, A:G.393, A:R.396 Salt bridges: A:K.390 pi-Cation interactions: A:R.396, A:R.396

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 2 residues within 4Å: Chain A: P.16, F.157 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maestre-Reyna, M. et al., Twist and turn: a revised structural view on the unpaired bubble of class II CPD photolyase in complex with damaged DNA. IUCrJ (2018)

Release Date

2018-08-22

Peptides

Deoxyribodipyrimidine photolyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Deoxyribodipyrimidine photolyase

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