SMTL ID : 8kcm.2 (1 other biounit)

MmCPDII-DNA complex containing low-dosage, light induced repaired DNA.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: Y.270, L.282, S.283, N.284, L.285, S.286, L.289, F.316, E.319, I.320, W.323, K.324, S.327, K.390, G.393, R.396, M.397, A.400, N.421, D.427, G.428, D.430, N.432, G.433, G.436, I.437, S.440 Chain B: T.7, T.8 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:R.396, A:A.400, A:I.437 Hydrogen bonds: A:Y.270, A:S.283, A:N.284, A:L.285, A:S.286, A:S.286, A:E.319, A:S.327, A:R.396, A:N.421, A:D.427, A:D.427, A:N.432 Water bridges: A:G.393, A:G.393, A:R.396, A:Y.434 Salt bridges: A:K.390 pi-Cation interactions: A:R.396

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: E.98, F.110 No protein-ligand interaction detected (PLIP) GOL.3: 6 residues within 4Å: Chain A: R.27, S.136, K.141, N.142, I.145, E.158 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.27, A:R.27, A:S.136, A:N.142, A:Y.332 Water bridges: A:S.136 GOL.4: 6 residues within 4Å: Chain A: R.85, E.88, F.89, F.243, P.245, F.248 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.85, A:F.248 GOL.5: 3 residues within 4Å: Chain A: C.419, D.422, R.423 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.419, A:R.423 Water bridges: A:E.415

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maestre-Reyna, M. et al., Visualizing the DNA repair process by a photolyase at atomic resolution. Science (2023)

Release Date

2023-11-22

Peptides

Deoxyribodipyrimidine photo-lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Deoxyribodipyrimidine photo-lyase

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