SMTL ID : 5zcw.2 (1 other biounit)

Structure of the Methanosarcina mazei class II CPD-photolyase in complex with intact, phosphodiester linked, CPD-lesion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 28 residues within 4Å: Chain A: Y.270, L.282, S.283, N.284, L.285, S.286, L.289, F.316, E.319, I.320, W.323, K.324, S.327, K.390, M.391, G.393, R.396, M.397, A.400, N.421, D.427, G.428, N.432, G.433, G.436, I.437, S.440 Chain B: T.7 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:R.396, A:A.400 Hydrogen bonds: A:Y.270, A:S.283, A:N.284, A:L.285, A:S.286, A:S.286, A:E.319, A:S.327, A:K.390, A:R.396, A:R.396, A:N.421, A:D.427, A:N.432 Water bridges: A:R.274, A:D.430 Salt bridges: A:K.390 pi-Cation interactions: A:R.396, A:R.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maestre-Reyna, M. et al., Twist and turn: a revised structural view on the unpaired bubble of class II CPD photolyase in complex with damaged DNA. IUCrJ (2018)

Release Date

2018-08-22

Peptides

Deoxyribodipyrimidine photolyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Deoxyribodipyrimidine photolyase

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