SMTL ID : 7vj6.1

SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the semiquinone state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: G.83, I.84, R.85, E.232, R.233, A.234, F.243, R.423 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.84, A:R.85, A:A.234 Water bridges: A:R.233 Salt bridges: A:R.85, A:R.423 SO4.2: 3 residues within 4Å: Chain A: A.178, H.179, R.182 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.178, A:H.179 Salt bridges: A:H.179, A:R.182 SO4.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 26 residues within 4Å: Chain A: Y.270, L.282, S.283, N.284, L.285, S.286, L.289, F.316, E.319, I.320, W.323, K.324, S.327, K.390, G.393, R.396, M.397, A.400, N.421, D.427, G.428, N.432, G.433, G.436, I.437, S.440 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:R.396, A:A.400, A:I.437 Hydrogen bonds: A:S.283, A:N.284, A:N.284, A:L.285, A:S.286, A:S.286, A:E.319, A:R.396, A:R.396, A:N.421, A:D.427, A:D.427, A:N.432 Water bridges: A:G.393, A:G.393, A:Y.434 Salt bridges: A:K.390 pi-Cation interactions: A:R.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maestre-Reyna, M. et al., Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme. Nat.Chem. (2022)

Release Date

2022-03-09

Peptides

DNA photolyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA photolyase

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