SMTL ID : 7yeb.1 (1 other biounit)

TR-SFX MmCPDII-DNA complex: 3.35 ns snapshot. Includes 3.35 ns, dark, and extrapolated structure factors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: G.83, I.84, R.85, E.232, R.233, A.234, F.243, R.423 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:I.84, A:R.85, A:A.234 Water bridges: A:E.232, A:R.233, A:R.233, A:A.234, A:R.423 Salt bridges: A:R.85, A:R.423

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 27 residues within 4Å: Chain A: Y.270, L.282, S.283, N.284, L.285, S.286, L.289, F.316, E.319, I.320, W.323, K.324, S.327, K.390, G.393, R.396, A.400, N.421, D.427, G.428, D.430, N.432, G.433, G.436, I.437, S.440 Chain B: T.7 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:A.400 Hydrogen bonds: A:Y.270, A:Y.270, A:S.283, A:N.284, A:N.284, A:L.285, A:S.286, A:S.286, A:R.396, A:R.396, A:N.421, A:D.427, A:N.432 Water bridges: A:K.390, A:Y.434 Salt bridges: A:K.390 pi-Cation interactions: A:R.396, A:R.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maestre-Reyna, M. et al., Visualizing the DNA repair process by a photolyase at atomic resolution. Science (2023)

Release Date

2023-11-22

Peptides

Deoxyribodipyrimidine photolyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Deoxyribodipyrimidine photolyase

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