SMTL ID : 6cij.1

Cryo-EM structure of mouse RAG1/2 HFC complex containing partial HMGB1 linker(3.9 A)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.463, C.466, H.673, H.678 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.463, A:C.466, A:H.673, A:H.678 ZN.3: 4 residues within 4Å: Chain B: C.463, C.466, H.673, H.678 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.463, B:C.466, B:H.673, B:H.678

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.336, G.337 Chain C: T.31 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.336, A:D.336, A:G.337 CA.4: 4 residues within 4Å: Chain B: D.336, G.337 Chain F: G.41, T.42 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.336, B:D.336, B:G.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M.S. et al., Cracking the DNA Code for V(D)J Recombination. Mol. Cell (2018)

Release Date

2018-04-25

Peptides

V(D)J recombination-activating protein 1: AB
High mobility group protein B1: G
V(D)J recombination-activating protein 2: IJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

G
N

I
D

J
B

V(D)J recombination-activating protein 1

High mobility group protein B1

V(D)J recombination-activating protein 2

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