SMTL ID : 6ecl.1

Crystal Structure of a 1,2,4-Triazole Allosteric RNase H Inhibitor in Complex with HIV Reverse Transcriptase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.445, D.500, D.551 Ligands: MN.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.445, A:D.551, H2O.4 MN.3: 5 residues within 4Å: Chain A: D.445, G.446, E.480, D.500 Ligands: MN.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.445, A:D.500, H2O.1

1 x T90: 1-[4-methoxy-3-[[5-methyl-4-(phenylmethyl)-1,2,4-triazol-3-yl]sulfanylmethyl]phenyl]ethanone(Non-covalent)

T90.2: 14 residues within 4Å: Chain A: P.97, L.102, K.103, K.105, V.108, Y.183, Y.190, P.227, F.229, W.231, L.236, H.237, P.238, Y.320 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.97, A:V.108, A:V.108, A:Y.183, A:Y.183, A:Y.190, A:P.227, A:F.229, A:P.238, A:Y.320 Hydrogen bonds: A:K.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kirby, K.A. et al., Crystal Structure of a 1,2,4-Triazole Allosteric RNase H Inhibitor in Complex with HIV Reverse Transcriptase. To be published

Release Date

2019-08-21

Peptides

Reverse transcriptase/ribonuclease H: A
Reverse transcriptase/ribonuclease H: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

Reverse transcriptase/ribonuclease H

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