SMTL ID : 7taz.1

Crystal structure of HIV-1 reverse transcriptase (RT) in complex with VM-1500A, a non-nucleoside RT inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VM5: 2-[4-bromo-3-(3-chloro-5-cyanophenoxy)-2-fluorophenyl]-N-(2-chloro-4-sulfamoylphenyl)acetamide(Non-covalent)

VM5.1: 20 residues within 4Å: Chain A: P.97, L.102, K.103, K.104, K.105, K.106, S.107, V.108, V.110, Y.183, Y.190, V.191, G.192, P.227, F.229, W.231, L.236, H.237, P.238, Y.320 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.102, A:V.108, A:V.108, A:P.227, A:L.236, A:Y.320 Hydrogen bonds: A:K.105, A:K.106, A:V.108, A:Y.320, A:Y.320 pi-Stacking: A:Y.190, A:W.231, A:W.231 Halogen bonds: A:Y.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snyder, A.A. et al., Crystal structure of HIV-1 reverse transcriptase (RT) in complex with VM-1500A, a non-nucleoside RT inhibitor. To Be Published

Release Date

2023-04-12

Peptides

Reverse transcriptase/ribonuclease H: A
Reverse transcriptase p51: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

Reverse transcriptase p51

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