SMTL ID : 7lpx.1

Crystal Structure of HIV-1 RT in Complex with NBD-14270

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.333, G.335, Q.336, K.514 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.336 Salt bridges: A:K.333 SO4.2: 6 residues within 4Å: Chain A: Y.429, Q.430, L.527, K.530, E.531, K.532 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.430, A:L.527, A:E.531 Water bridges: A:V.533 SO4.4: 4 residues within 4Å: Chain B: K.276, V.277, R.278, E.303 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:V.277, B:R.278 Water bridges: B:I.275, A:K.542 Salt bridges: A:K.542 SO4.5: 7 residues within 4Å: Chain A: I.382, T.388 Chain B: T.28, K.31, T.401, W.402, E.405 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.401, B:E.405, B:E.405, A:T.388 Water bridges: B:T.28 Salt bridges: B:K.31

1 x YB7: ~{N}-[(1~{S})-2-azanyl-1-[5-(hydroxymethyl)-1,3-thiazol-2-yl]ethyl]-3-methyl-5-[5-(trifluoromethyl)pyridin-2-yl]-1~{H}-pyrrole-2-carboxamide(Non-covalent)

YB7.3: 11 residues within 4Å: Chain A: P.97, L.102, V.110, D.112, Y.183, Y.185, D.188, Y.190, F.229, W.231, M.232 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.110, A:V.110, A:Y.190, A:Y.190, A:F.229 Hydrogen bonds: A:D.188, A:D.188, A:W.231 pi-Stacking: A:W.231, A:W.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Losada, N. et al., HIV-1 gp120 Antagonists Also Inhibit HIV-1 Reverse Transcriptase by Bridging the NNRTI and NRTI Sites. J.Med.Chem. (2021)

Release Date

2021-11-17

Peptides

Reverse transcriptase p66: A
Reverse transcriptase p51: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase p66

Reverse transcriptase p51

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