SMTL ID : 7lqu.1

Crystal Structure of HIV-1 RT in Complex with NBD-14075

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x YBD: ~{N}-[(1~{R})-2-azanyl-1-[5-(hydroxymethyl)-1,3-thiazol-2-yl]ethyl]-5-(4-chloranyl-3-fluoranyl-phenyl)-1~{H}-pyrrole-2-carboxamide(Non-covalent)

YBD.1: 10 residues within 4Å: Chain A: P.97, V.110, Y.183, Y.185, D.188, Y.190, H.223, F.229, W.231, L.236 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.190, A:F.229, A:W.231, A:L.236 Hydrogen bonds: A:D.188, A:D.188, A:H.223 pi-Stacking: A:W.231, A:W.231

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: Y.429, Q.430, L.527, K.530, E.531, K.532 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.430, A:L.527 SO4.3: 4 residues within 4Å: Chain A: K.333, G.335, Q.336, K.514 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.336, A:Q.336 Salt bridges: A:K.333, A:K.514 SO4.4: 4 residues within 4Å: Chain B: K.276, V.277, R.278, E.303 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:V.277, B:R.278 Salt bridges: B:K.276, A:K.542

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Losada, N. et al., HIV-1 gp120 Antagonists Also Inhibit HIV-1 Reverse Transcriptase by Bridging the NNRTI and NRTI Sites. J.Med.Chem. (2021)

Release Date

2021-11-17

Peptides

Reverse transcriptase p66: A
Reverse transcriptase p51: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase p66

Reverse transcriptase p51

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