- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- monomer
- Ligands
- 1 x FRU- GLC- GLA: alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose(Non-covalent)
- 36 x CA: CALCIUM ION(Non-covalent)
CA.2: 3 residues within 4Å:- Chain A: E.168, A.169
- Ligands: CA.19
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.168, A:A.169, H2O.1, H2O.3, H2O.9
CA.3: 1 residues within 4Å:- Chain A: D.410
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.410, H2O.1, H2O.3, H2O.7, H2O.12
CA.4: 6 residues within 4Å:- Chain A: D.458, D.460, D.462, F.464, N.466, N.476
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.458, A:D.460, A:D.462, A:F.464
CA.5: 3 residues within 4Å:- Chain A: T.418, A.419, I.420
No protein-ligand interaction detected (PLIP)CA.6: 4 residues within 4Å:- Chain A: A.182, V.183, D.185, V.188
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:A.182, A:V.183, A:D.185, A:V.188, H2O.9
CA.7: 2 residues within 4Å:- Chain A: K.74, G.76
No protein-ligand interaction detected (PLIP)CA.8: 3 residues within 4Å:- Chain A: W.48, Y.85, N.308
No protein-ligand interaction detected (PLIP)CA.9: 6 residues within 4Å:- Chain A: R.96, P.97, Y.280, P.282, D.283, L.314
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:Y.280
CA.10: 3 residues within 4Å:- Chain A: S.148, E.149, D.150
No protein-ligand interaction detected (PLIP)CA.11: 2 residues within 4Å:- Chain A: P.553, L.567
No protein-ligand interaction detected (PLIP)CA.12: 2 residues within 4Å:- Chain A: E.146, W.147
No protein-ligand interaction detected (PLIP)CA.13: 4 residues within 4Å:- Chain A: K.133, D.134, N.589, R.592
No protein-ligand interaction detected (PLIP)CA.14: 3 residues within 4Å:- Chain A: Y.255, N.256, K.259
No protein-ligand interaction detected (PLIP)CA.15: 1 residues within 4Å:- Chain A: Y.43
No protein-ligand interaction detected (PLIP)CA.16: 2 residues within 4Å:- Chain A: D.47, W.48
No protein-ligand interaction detected (PLIP)CA.17: 3 residues within 4Å:- Chain A: V.84, A.652, A.653
No protein-ligand interaction detected (PLIP)CA.18: 3 residues within 4Å:- Chain A: K.133, T.429, S.430
No protein-ligand interaction detected (PLIP)CA.19: 2 residues within 4Å:- Chain A: E.168
- Ligands: CA.2
No protein-ligand interaction detected (PLIP)CA.20: 2 residues within 4Å:- Chain A: T.254, Y.255
No protein-ligand interaction detected (PLIP)CA.21: 2 residues within 4Å:- Chain A: P.248, S.251
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:P.248, A:S.251
CA.22: 2 residues within 4Å:- Chain A: V.413, K.414
No protein-ligand interaction detected (PLIP)CA.23: 3 residues within 4Å:- Chain A: W.376, G.377, P.562
No protein-ligand interaction detected (PLIP)CA.24: 2 residues within 4Å:- Chain A: P.571, F.572
No protein-ligand interaction detected (PLIP)CA.25: 2 residues within 4Å:- Chain A: K.414, G.415
No protein-ligand interaction detected (PLIP)CA.26: 6 residues within 4Å:- Chain A: W.100, Y.266, M.267, N.268, M.269, P.277
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:Y.266
CA.27: 6 residues within 4Å:- Chain A: S.107, Q.108, G.109, W.110, D.114, L.191
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.114
CA.28: 5 residues within 4Å:- Chain A: E.98, Q.106, N.260, F.262, P.263
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:N.260, H2O.12
CA.29: 6 residues within 4Å:- Chain A: A.324, G.327, G.329, D.330, A.354, N.622
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:A.324, A:G.329
CA.30: 5 residues within 4Å:- Chain A: P.264, E.265, Y.266, M.267, Y.280
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:P.264
CA.31: 4 residues within 4Å:- Chain A: R.65, A.162, K.163, Y.293
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:R.65, A:Y.293
CA.32: 5 residues within 4Å:- Chain A: P.67, E.69, K.143, V.159, K.160
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.69
CA.33: 4 residues within 4Å:- Chain A: Y.102, I.103, G.238, L.243
No protein-ligand interaction detected (PLIP)CA.34: 6 residues within 4Å:- Chain A: H.91, V.92, G.111, R.320, F.331, E.641
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:G.111, A:E.641, H2O.2
CA.35: 6 residues within 4Å:- Chain A: K.133, D.134, Q.225, Y.228, V.542, R.592
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:K.133, H2O.11
CA.36: 3 residues within 4Å:- Chain A: F.37, K.143, S.144
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:K.143, H2O.10
CA.37: 2 residues within 4Å:- Chain A: R.31, P.139
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, T. et al., The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum. J. Biol. Chem. (2018)
- Release Date
- 2018-04-11
- Peptides
- Periplasmic alpha-galactoside-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- monomer
- Ligands
- 1 x FRU- GLC- GLA: alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose(Non-covalent)
- 36 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, T. et al., The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum. J. Biol. Chem. (2018)
- Release Date
- 2018-04-11
- Peptides
- Periplasmic alpha-galactoside-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B