- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- monomer
- Ligands
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x BQZ: galactinol(Non-covalent)
BQZ.13: 16 residues within 4Å:- Chain A: W.110, G.111, G.112, I.115, W.317, R.320, N.333, E.335, N.484, Y.487, S.515, D.519, R.533, W.639, E.641
- Ligands: EDO.8
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:G.111, A:G.112, A:R.320, A:R.320, A:N.333, A:E.335, A:N.484, A:Y.487, A:Y.487, A:D.519, A:R.533, A:R.533, A:E.641
- Water bridges: A:D.114, A:W.317, A:S.515, A:R.518
- Salt bridges: A:R.533
- 4 x CA: CALCIUM ION(Non-covalent)
CA.14: 6 residues within 4Å:- Chain A: D.458, D.460, D.462, F.464, N.466, N.476
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.458, A:D.462, A:F.464
CA.15: 1 residues within 4Å:- Chain A: H.511
No protein-ligand interaction detected (PLIP)CA.16: 5 residues within 4Å:- Chain A: P.264, Y.266, M.267, S.279, Y.280
No protein-ligand interaction detected (PLIP)CA.17: 4 residues within 4Å:- Chain A: A.182, V.183, D.185, V.188
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:A.182, A:V.183, A:D.185, A:V.188
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.18: 1 residues within 4Å:- Chain A: A.348
No protein-ligand interaction detected (PLIP)PEG.19: 5 residues within 4Å:- Chain A: N.485, G.486, Y.487, A.488, K.491
2 PLIP interactions:2 interactions with chain A- Water bridges: A:W.317, A:A.488
PEG.20: 3 residues within 4Å:- Chain A: E.299, K.300
- Ligands: CL.36
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.300
- Water bridges: A:K.300
PEG.21: 7 residues within 4Å:- Chain A: S.44, E.45, P.46, D.47, Y.85, Q.302
- Ligands: CL.35
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.44, A:D.47, A:Q.302
- Water bridges: A:W.48
- 1 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-covalent)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 13 x CL: CHLORIDE ION(Non-functional Binders)
CL.24: 7 residues within 4Å:- Chain A: V.84, Y.85, G.86, Y.306, W.650, V.651, Q.656
Ligand excluded by PLIPCL.25: 3 residues within 4Å:- Chain A: L.127, V.130, F.637
Ligand excluded by PLIPCL.26: 3 residues within 4Å:- Chain A: P.186, N.187, S.189
Ligand excluded by PLIPCL.27: 3 residues within 4Å:- Chain A: E.23, A.357, F.358
Ligand excluded by PLIPCL.28: 3 residues within 4Å:- Chain A: K.623, F.625, S.626
Ligand excluded by PLIPCL.29: 5 residues within 4Å:- Chain A: E.338, N.339, V.341, A.342
- Ligands: EDO.12
Ligand excluded by PLIPCL.30: 2 residues within 4Å:- Chain A: R.355, L.356
Ligand excluded by PLIPCL.31: 3 residues within 4Å:- Chain A: T.254, Y.255, N.256
Ligand excluded by PLIPCL.32: 2 residues within 4Å:- Chain A: Y.43, K.63
Ligand excluded by PLIPCL.33: 6 residues within 4Å:- Chain A: R.96, P.97, Y.280, P.282, D.283, L.314
Ligand excluded by PLIPCL.34: 1 residues within 4Å:- Chain A: K.313
Ligand excluded by PLIPCL.35: 4 residues within 4Å:- Chain A: W.48, Y.85, N.308
- Ligands: PEG.21
Ligand excluded by PLIPCL.36: 2 residues within 4Å:- Chain A: K.300
- Ligands: PEG.20
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, T. et al., The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum. J. Biol. Chem. (2018)
- Release Date
- 2018-04-18
- Peptides
- Periplasmic alpha-galactoside-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- monomer
- Ligands
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x BQZ: galactinol(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-covalent)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 13 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, T. et al., The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum. J. Biol. Chem. (2018)
- Release Date
- 2018-04-18
- Peptides
- Periplasmic alpha-galactoside-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
C