- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 1 x FRU- GLC- GAL- GAL: beta-D-galactopyranose-(1-6)-beta-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose(Non-functional Binders)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 7 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 8 residues within 4Å:- Chain A: D.321, V.322, V.325, N.339, A.342, S.343, R.346
- Ligands: EDO.16
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.346
PEG.4: 4 residues within 4Å:- Chain A: S.44, V.82, K.300, Q.302
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.44, A:S.44
PEG.5: 6 residues within 4Å:- Chain A: T.316, N.485, G.486, Y.487, A.488, K.491
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.491
PEG.6: 6 residues within 4Å:- Chain A: D.80, K.623, F.625, S.626, W.650, K.655
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.626, A:K.655
PEG.7: 3 residues within 4Å:- Chain A: A.22, L.344, F.417
No protein-ligand interaction detected (PLIP)PEG.8: 11 residues within 4Å:- Chain A: A.357, F.358, G.359, P.360, L.362, G.617, L.619, T.632, P.633, I.634, F.635
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.359, A:L.619, A:T.632, A:I.634, A:F.635, A:F.635
PEG.9: 6 residues within 4Å:- Chain A: D.32, T.33, K.74, G.76, N.77
- Ligands: CA.24
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.74, A:K.74, A:G.76, A:N.77
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 3 residues within 4Å:- Chain A: P.350, N.351, K.623
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.350
- Water bridges: A:K.623
EDO.11: 5 residues within 4Å:- Chain A: G.327, P.353, N.622, R.624, Y.659
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.90, A:G.327, A:R.624, A:Y.659
EDO.12: 4 residues within 4Å:- Chain A: G.94, G.95, R.96, N.516
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.94, A:R.96, A:N.516, A:N.516
- Water bridges: A:S.515
EDO.13: 2 residues within 4Å:- Chain A: P.79, D.80
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.80, A:D.80
EDO.14: 2 residues within 4Å:- Chain A: K.133, S.430
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.133, A:S.430
EDO.15: 4 residues within 4Å:- Chain A: P.46, D.47, Y.85
- Ligands: CA.23
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.47
- Water bridges: A:Y.85
EDO.16: 5 residues within 4Å:- Chain A: E.338, N.339, A.342
- Ligands: PEG.3, EDO.20
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.339
EDO.17: 9 residues within 4Å:- Chain A: T.400, L.403, D.404, R.405, K.406, Y.439, Y.440, P.441, F.442
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.405, A:R.405, A:K.406, A:Y.439, A:Y.440, A:F.442
EDO.18: 0 residues within 4Å:- (No contacts)
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.654
EDO.19: 2 residues within 4Å:- Chain A: E.265, P.282
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.265
- Water bridges: A:E.265, A:E.265
EDO.20: 4 residues within 4Å:- Chain A: V.341, A.342, K.345
- Ligands: EDO.16
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.345
- Water bridges: A:A.342
EDO.21: 4 residues within 4Å:- Chain A: R.31, E.136, S.144, W.145
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.31, A:R.31, A:W.145, A:W.145
- 5 x CA: CALCIUM ION(Non-covalent)
CA.22: 6 residues within 4Å:- Chain A: D.458, D.460, D.462, F.464, N.466, N.476
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.458, A:D.460, A:D.462, A:F.464
CA.23: 4 residues within 4Å:- Chain A: W.48, Y.85, N.308
- Ligands: EDO.15
No protein-ligand interaction detected (PLIP)CA.24: 4 residues within 4Å:- Chain A: K.74, G.76, E.299
- Ligands: PEG.9
No protein-ligand interaction detected (PLIP)CA.25: 2 residues within 4Å:- Chain A: P.79
- Ligands: PG4.2
No protein-ligand interaction detected (PLIP)CA.26: 2 residues within 4Å:- Chain A: P.239, P.270
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, T. et al., The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum. J. Biol. Chem. (2018)
- Release Date
- 2018-04-11
- Peptides
- Periplasmic alpha-galactoside-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 1 x FRU- GLC- GAL- GAL: beta-D-galactopyranose-(1-6)-beta-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose(Non-functional Binders)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 7 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, T. et al., The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum. J. Biol. Chem. (2018)
- Release Date
- 2018-04-11
- Peptides
- Periplasmic alpha-galactoside-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B