- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- monomer
- Ligands
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x BQZ: galactinol(Non-covalent)
BQZ.16: 15 residues within 4Å:- Chain A: W.110, G.111, G.112, I.115, W.317, R.320, N.333, E.335, N.484, Y.487, S.515, D.519, R.533, W.639, E.641
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:G.111, A:R.320, A:R.320, A:N.333, A:E.335, A:N.484, A:Y.487, A:Y.487, A:S.515, A:D.519, A:R.533, A:R.533, A:E.641
- Water bridges: A:D.114, A:Y.232, A:W.317, A:S.515, A:R.532, A:W.639
- Salt bridges: A:R.533
- 5 x CA: CALCIUM ION(Non-covalent)
CA.17: 2 residues within 4Å:- Chain A: D.410, G.415
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:G.415
CA.18: 6 residues within 4Å:- Chain A: R.96, P.97, Y.280, P.282, D.283, L.314
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:Y.280
CA.19: 3 residues within 4Å:- Chain A: L.127, V.130, F.637
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:V.130
CA.20: 6 residues within 4Å:- Chain A: D.458, D.460, D.462, F.464, N.466, N.476
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.458, A:D.460, A:D.462, A:F.464
CA.21: 4 residues within 4Å:- Chain A: A.182, V.183, D.185, V.188
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:A.182, A:V.183, A:D.185, A:V.188, H2O.2
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-functional Binders)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.25: 4 residues within 4Å:- Chain A: W.48, Y.85, N.308
- Ligands: EDO.10
Ligand excluded by PLIPCL.26: 8 residues within 4Å:- Chain A: V.84, Y.85, G.86, Y.306, L.307, W.650, V.651, Q.656
Ligand excluded by PLIPCL.27: 3 residues within 4Å:- Chain A: K.74, G.76, E.299
Ligand excluded by PLIPCL.28: 4 residues within 4Å:- Chain A: R.518, Y.523, R.532, W.557
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, T. et al., The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum. J. Biol. Chem. (2018)
- Release Date
- 2018-04-18
- Peptides
- Periplasmic alpha-galactoside-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- monomer
- Ligands
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x BQZ: galactinol(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-functional Binders)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, T. et al., The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum. J. Biol. Chem. (2018)
- Release Date
- 2018-04-18
- Peptides
- Periplasmic alpha-galactoside-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A